Query= MSMg01no407_p03.b1 MSMg01no407_p03.b1 CHROMAT_FILE:
MSMg01no407_p03.b1 PHD_FILE: MSMg01no407_p03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:45 2005
(619 letters)
>mm_chr9_110616989_110618008
Length = 1020
Score = 1021 bits (528), Expect = 0.0
Identities = 555/564 (98%), Gaps = 1/564 (0%)
Strand = Plus / Minus
Query: 54 agagatccatttgtgtgaatgtgcctcctaacccccatgcccttgcaagctcaggtgtca 113
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1020 agagatccatttgtgtgtatgtgcctcctaacccccatgcccttgcaagctcaggtgtca 961
Query: 114 ggacaaggagtaggaggaccaacttcacagtaagacttctgggaagggaacttgggtcat 173
|||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||
Sbjct: 960 ggacaaggagtaggaggaccaactccacagtaaggcttctgggaagggaacttgggtcat 901
Query: 174 caggtttggtggcaagtgactttaccctctgagcatcttcctgtgtgtctctcctccctg 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 900 caggtttggtggcaagtgactttaccctctgagcatcttcctgtgtgtctctcctccctg 841
Query: 234 ttgtgcgacaccatctcacacagtttacattagccttgtactcactatgtagttagggat 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 840 ttgtgcgacaccatctcacacagtttacattagccttgtactcactatgtagttagggat 781
Query: 294 gacaatgaatggatcctcttgcatctgtcatctgcctgcatc-tgcttcacgtggtgagt 352
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 780 gacaatgaatggatcctcttgcatctgtcatctgcctgcatcttgcttcacgtggtgagt 721
Query: 353 ggcagggactgaatccaggtctttgtgcacattgagcaaacactctaacaaccaggtaca 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 720 ggcagggactgaatccaggtctttgtgcacattgagcaaacactctaacaaccaggtaca 661
Query: 413 cgtccccttttccccctaagatgaggcctcactgtgtggcccatgcagtttttgaactcc 472
| ||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||
Sbjct: 660 catccccttttccccctaagatgaggcctcactgtgtagcccaggcagtttttgaactcc 601
Query: 473 ttcctcagactcccaaggatgtccaaacatgcctggcaaagcactacaatttttcacttt 532
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 600 ttcctcagactcccaaggatgtccaaacatacctggcaaagcactacaatttttcacttt 541
Query: 533 tatgaatcttttttttttcctttgaagacaggatttctctgtgtagccctggctgtcctg 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 540 tatgaatcttttttttttcctttgaagacaggatttctctgtgtagccctggctgtcctg 481
Query: 593 aactagctctgtacaccaagctgg 616
||||||||||||| ||||||||||
Sbjct: 480 aactagctctgtagaccaagctgg 457
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 619
Length of database: 1020
Length adjustment: 10
Effective length of query: 609
Effective length of database: 1010
Effective search space: 615090
Effective search space used: 615090
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no407_p03.g1 MSMg01no407_p03.g1 CHROMAT_FILE:
MSMg01no407_p03.g1 PHD_FILE: MSMg01no407_p03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:23:45 2005
(536 letters)
>mm_chr9_110452269_110453204
Length = 936
Score = 990 bits (512), Expect = 0.0
Identities = 530/536 (98%)
Strand = Plus / Plus
Query: 1 catattgcatgagggaagaggaagaccagaaatccccctagatgaggaacaaagaggcca 60
||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 201 catattgcatgagagaagaggaagaccagaaatccccttagatgaggaacaaagaggcca 260
Query: 61 cacacacatttctgatgattcagaagtggtatttccttatgatttgaacttgaccatgga 120
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tacacatatttctgatgattcagaagtggtatttccttatgatttgaacttgaccatgga 320
Query: 121 agacagtgatggtataacctacaccttaaaatgtgacagtagtggaaatgctccagagat 180
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 321 agacagtgatggtataacctacaccttaaaatgtgatagtagtggaaatgctccagagat 380
Query: 181 tgtatctactgtccatgaagactattctggatcttctgcaagttcaagcgatgaaagtga 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgtatctactgtccatgaagactattctggatcttctgcaagttcaagcgatgaaagtga 440
Query: 241 ttctgaagatacagagtctgatgatagcagtattccaagaaaccgactccagtctgttgt 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttctgaagatacagagtctgatgatagcagtattccaagaaaccgactccagtctgttgt 500
Query: 301 ggttgtgccaaagaattctactttgcccatggaagagacaagtccctgttcttctcggag 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggttgtgccaaagaattctactttgcccatggaagagacaagtccctgttcttctcggag 560
Query: 361 cagtcagagctacaaacattattcagaccgctgggaagatggattagagaccaggagaca 420
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 561 cagtcagagctacaaacattattctgaccgctgggaagatggattagagaccaggagaca 620
Query: 421 tgcatatgaggaagagtatgagagtaaaggctgttctcaaactgaaaaatacttccttca 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgcatatgaggaagagtatgagagtaaaggctgttctcaaactgaaaaatacttccttca 680
Query: 481 taaaggaacagagagaagtgcagaaagttgttattcacagtttggcaggaaagcag 536
||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 taaaggaacagagagaagtgcagaaagttgttattcacagtttggcaggaaagcag 736
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 936
Length adjustment: 10
Effective length of query: 526
Effective length of database: 926
Effective search space: 487076
Effective search space used: 487076
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
