Query= MSMg01no408_g13.b1 MSMg01no408_g13.b1 CHROMAT_FILE:
MSMg01no408_g13.b1 PHD_FILE: MSMg01no408_g13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:23 2005
(521 letters)
>mm_chr9_14393024_14393944
Length = 921
Score = 942 bits (487), Expect = 0.0
Identities = 513/522 (98%), Gaps = 2/522 (0%)
Strand = Plus / Plus
Query: 1 cattcccattagcagcacaagctacacaagccaagtcaccacagagtgagtcagaatgaa 60
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 201 cattcccattagcagcacaagctacccaagccaagtcaccacagagtgagtcagaatgaa 260
Query: 61 taacaaacgtttgctttgggggtagagggagtcaccgtcctccacaagaacagcccaagt 120
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 261 taacaaacgtttgctttgggggtagagggagtcaccgtcctccacaagaacagctcaagt 320
Query: 121 ctcatcttgtcctcacggtgacccactttcaattccagatgaagatg-aagcaagctgga 179
||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||
Sbjct: 321 ctcatcttgtcctcacggtgacccactttcaattccagatgaaga-gcaagcaagctgga 379
Query: 180 gcagaggaagaccagaagcacatccttggagctgccccagggccagctcttgtgttcgta 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gcagaggaagaccagaagcacatccttggagctgccccagggccagctcttgtgttcgta 439
Query: 240 gcactcctcctcatgatctcttgagctcactcacagaaggggccaggatgctctaggtca 299
|||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gcactcctcctcatgaccacttgagctcactcacagaaggggccaggatgctctaggtca 499
Query: 300 gctatacttgggccagtggctgctctcaccagtttacacaagttaaaggggataacatca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 gctatacttgggccagtggctgctctcaccagtttacacaagttaaaggggataacatca 559
Query: 360 actatcagaacaggcagagagcgctgagcgactgggagtcagaccctcactctcctccca 419
|||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 560 actatcagaacaggcaaagagctctgagcgactgggagtcagaccctcactctcctccca 619
Query: 420 agaacttgaatgtatttcatatccttcaaacttgtctcanagagtaataggttgggtcaa 479
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 620 agaacttgaatgtatttcatatccttcaaacttgtctcaaagagtaataggttgggtcaa 679
Query: 480 attgctgggtatccattagatcctaagcagggcctcttgtag 521
||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 attgctgggtatccattagatcctaagcagggcctcttgtag 721
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 521
Length of database: 921
Length adjustment: 10
Effective length of query: 511
Effective length of database: 911
Effective search space: 465521
Effective search space used: 465521
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no408_g13.g1 MSMg01no408_g13.g1 CHROMAT_FILE:
MSMg01no408_g13.g1 PHD_FILE: MSMg01no408_g13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:24:23 2005
(505 letters)
>mm_chr9_14562683_14563587
Length = 905
Score = 893 bits (462), Expect = 0.0
Identities = 495/506 (97%), Gaps = 2/506 (0%)
Strand = Plus / Minus
Query: 1 cagtcctccctccctttctc-cctccctctctctcctctgtctgtctgtctgtctgtctg 59
|||||||||||||||||||| |||| ||| ||| ||||||||||||||||||||||||
Sbjct: 775 cagtcctccctccctttctctcctctgtctgtct-gtctgtctgtctgtctgtctgtctg 717
Query: 60 tctgtctgtctctgtacacacatgtgtgatcaagatagtgtgcctctcccaagtgtagag 119
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 716 tctgtctgtctctgtacacacatgtgtgatcaagatagtgtgcctctcccaagtgtagag 657
Query: 120 tcgtggctattaggtgggttctcacgcctgatttagagactgcacaatatccactgtcct 179
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 656 tcgtggctattaggtgggttctcacgcctgatttagagactgcacaatatccactgtcct 597
Query: 180 cattgcatcacaagcttaactcatttgctctcaccacttccttattctgcaccatgttaa 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 596 cattgcatcacaagcttaactcatttgctctcaccacttccttattctgcaccatgttaa 537
Query: 240 caaaccttattaacaaatggtcacttagcccactgtaagctcgacagtgcctgcagagtc 299
|||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 536 caaaccggaagaacaaatggtcacttagcccactgtaagctcgacagtgcctgcagagtc 477
Query: 300 catgggttccttatgatggacggctcagaccctgcttcaggccaggctggctctgaggct 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 catgggttccttatgatggacggctcagaccctgcttcaggccaggctggctctgaggct 417
Query: 360 cttcagtgtgttgccattgcccagaaccacactccaacacttggggcttcagggtggtcg 419
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 416 cttcagtgtgttgccattgcccagaaccacactccaacacttggggcttcggggtggtcg 357
Query: 420 gggcttctgggccacattctgccctgcatgtgaaccgccatgagaatgatgactctgacg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 gggcttctgggccacattctgccctgcatgtgaaccgccatgagaatgatgactctgacg 297
Query: 480 ttagattgaaatggggttaggattaa 505
||||||||||||||||||||||||||
Sbjct: 296 ttagattgaaatggggttaggattaa 271
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 36
Number of extensions: 8
Number of successful extensions: 7
Number of sequences better than 10.0: 1
Number of HSP's gapped: 4
Number of HSP's successfully gapped: 1
Length of query: 505
Length of database: 905
Length adjustment: 10
Effective length of query: 495
Effective length of database: 895
Effective search space: 443025
Effective search space used: 443025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
