BAC Information

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BAC

Clone NameMSMg01-409H10
Chromosome9 (Build37)
Map Location 27,255,343 - 27,255,591
singlet/doubletsinglet
Overlap genenone
Upstream geneB3gat1, BC038479, Glb1l3, Gm1110, LOC330907, Acad8, Thyn1, Vps26b, Ncapd3, Jam3, Igsf9b, Spata19
Downstream geneLOC666440, LOC100041202, Opcml
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-409H10.T7 (MSMg01no409_h10.b1)MSMg01-409H10.TJ (MSMg01no409_h10.g1)
ACCAG506942AG506943
length803805
length of high quality
(start - end)
249 (77 - 325)418 (76 - 493)
definitionCHROMAT_FILE: MSMg01no409_h10.b1 PHD_FILE: MSMg01no409_h10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:50 2005CHROMAT_FILE: MSMg01no409_h10.g1 PHD_FILE: MSMg01no409_h10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:25:50 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTCGAAAATCCGCGGA
ATTCAAAGCAGTGTTTCCGACGACAATAAGTGTTGTGTAAGGGCAGTTTT
GCTGGTGGCTTTATGGCACTAGGCTTTGGAAAGCACCGTGGACTTGGCCT
TTCATTTCCTAGAGAAGTGCTCTTTTTCTTGTTTTTTTAAGAGTCTACAT
TTCAGATTCACTGATTGGGTCATTTTGGCTCTCCATCTGATGCAGACACT
TCCATGAGTGCCTCATTACATCAAGGATACAACACAATCCAAACTATCTT
TAAAGACCTCTAAAGTCCTGTACTACTGTGTGTCTATGGCTTCTCTTTTA
ATATTCTTCCAAACCCCTTCACTTACACAAGTATACGATGCTGGCTGCTT
GCTTTGCTCACATACATTTTCACAATAGCATCATCCCATTCTCTGGCCCA
GAGACTCCCCTGGAAGTGTTCCTGCCCGGCTGCCTCCAGGACACAGGTGT
GCTCATAGCACTTGCTCATAGAAGCCTCCTCTCACCATCCAACTTAAAAT
GGCTCTCGCATCTCGAATGTCCTAACTCACTTTATTTTGGCATCTTACTC
ACTTATTACTATCCGCAACTGGCTTAACTTCATTCTTCCATTTAGTAACC
TCTTTGTCAATTGGCCCCTGGCTTTTATTTTTATAATCAAGCCACCCCGG
ATTTTCTTACCTTGTTCCCCCCCAACAGCTCTCCACTCATCCTTCCGGAC
TCTCTTATAAATTTACTCTACCCCTCTTTTTCCCTCTCCTAATCTTCTAT
CTG
CGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXAAGGCTGGTACTGTAAACCTAACCA
ACTACCTATGGCTGGTGAGGTCACTGACCCCAGAGGAGAACAATTACTAC
CACTTTCTTAAGCCAGCGTAATTCTTAAGTTTATTCTAAATACCTATCCT
TATATCCACAGATAGATAGAGCTCCCACCTCTCATCAAAAGAGTTTCTTT
TTGCAGCAGAAGATCATCCCAGAAACCCACAACTGGTCAGAATGCAGGGT
TCCCAACCCTAATTGATACATAGAAAACCCAACCTCTAAAGAACCAGGGC
ACATGTTGGAGGAGTGGGCAGAAATACTGGAGAAGCCGGAAGACTAGGAT
GTCTGCTTTAAGATAGCATCTTTTAAATATTACAAGGAGCTGTACCCATG
AAATCTCAAACATATGCTCATCTAAGTACAACCTATATAATGACAACCCC
AGTTGATATGCCAATGTGGATACAAAAATATCTCACATGGCCCCACCCCT
TGAAGAGCTAAGGGTATTTATGACTTAAGAGAAGGAGATCCCGTCTTTTT
CCAGAAATAAGTCCCCCTAAAAGGTAACCTGTTCAGTAGGGGCCTTTCCT
AATCTTTTATTCATATTGGTACTTCTTTCTGGGTTTTTCTTATCTCCAGG
GGTCCAACTTTTTGTTAGTGGTACCACTTTATGGGGCTTGGTATTTTATA
TATCTCTAATCCTATCTCCCCATTCTTTTTCCTCCTCCTCTTTTCATATC
TCTAT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no409_h10.b1 MSMg01no409_h10.b1 CHROMAT_FILE:
MSMg01no409_h10.b1 PHD_FILE: MSMg01no409_h10.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:25:50 2005
         (249 letters)



>mm_chr9_27255143_27255791
          Length = 649

 Score =  458 bits (237), Expect = e-133
 Identities = 246/249 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   taagtgttgtgtaagggcagttttgctggtggctttatggcactaggctttggaaagcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 taagtgttgtgtaagggcagttttgctggtggctttatggcactaggctttggaaagcac 260

                                                                       
Query: 61  cgtggacttggcctttcatttcctagagaagtgctctttttcttgtttttttaagagtct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 261 cgtggacttggcctttcatttcctagagaagtgctctttttcttgttttcttaagagtct 320

                                                                       
Query: 121 acatttcagattcactgattgggtcattttggctctccatctgatgcagacacttccatg 180
           |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acattttagattcactgattgggtcattttggctctccatctgatgcagacacttccatg 380

                                                                       
Query: 181 agtgcctcattacatcaaggatacaacacaatccaaactatctttaaagacctctaaagt 240
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 aatgcctcattacatcaaggatacaacacaatccaaactatctttaaagacctctaaagt 440

                    
Query: 241 cctgtacta 249
           |||||||||
Sbjct: 441 cctgtacta 449


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)