Query= MSMg01no409_j11.b1 MSMg01no409_j11.b1 CHROMAT_FILE:
MSMg01no409_j11.b1 PHD_FILE: MSMg01no409_j11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:00 2005
(397 letters)
>mm_chr9_115865491_115866287
Length = 797
Score = 671 bits (347), Expect = 0.0
Identities = 368/377 (97%), Gaps = 4/377 (1%)
Strand = Plus / Plus
Query: 21 tcacatacacccacatatatatacacacatatatatacatacacacacacatgcacacac 80
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 225 tcacacacacccacatatatatacacacatatatatacatacacacacacatgcacacac 284
Query: 81 atacatgatttgtagatatatacatacacacacacacacacatgcacacacatacatgat 140
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 285 atacatgatttgtagatatatacat----acacacacacacatgcacacacatacatgat 340
Query: 141 ttgtagatatgatacatttttggcaatccacagcttcttctgcctctattcttatgcctt 200
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 341 ttgtagatatgatacatttttggcaatccacagcttcttctgcctctattcttatgcctt 400
Query: 201 gattgctttggggaagcatccgtgtccctgagtttcagctcacgttaaggctagagattc 260
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 401 gattgctttggggaagcatccgtgtccctgagtttcagctcacgttaaggctagagattc 460
Query: 261 tgaccctcccctgcattgtgtgtccttgtgtctcctggaatgtggtacttggacctctgt 320
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||
Sbjct: 461 tgaccctcccctgcactgtgtgtccttgtgtctcctggaatgtggtacttggacctccgt 520
Query: 321 gagattcaaataggatttcttttcgtttttttacctttcgttcttccttggaaagaatgc 380
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 521 gagattcaaataggatttcttttcgtttttttacctttccttcttccttggaaagaatgc 580
Query: 381 ccgctgcctccttctgt 397
||||||||| |||||||
Sbjct: 581 ccgctgccttcttctgt 597
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 29
Number of extensions: 4
Number of successful extensions: 4
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3
Number of HSP's successfully gapped: 1
Length of query: 397
Length of database: 797
Length adjustment: 9
Effective length of query: 388
Effective length of database: 788
Effective search space: 305744
Effective search space used: 305744
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no409_j11.g1 MSMg01no409_j11.g1 CHROMAT_FILE:
MSMg01no409_j11.g1 PHD_FILE: MSMg01no409_j11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:26:00 2005
(459 letters)
>mm_chr9_116045986_116046844
Length = 859
Score = 857 bits (443), Expect = 0.0
Identities = 455/459 (99%)
Strand = Plus / Minus
Query: 1 agaggtatatgagtagggctggtgaattgctcatcagatataagtcctctttgcacagtc 60
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 659 agaggtatatgagtagggctggtgaatcgctcatcagatataagtcctctttgcacagtc 600
Query: 61 ctgaagagcctagttggatccctgagacccaagtaaagctggaagagaaaaccaactcta 120
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 599 ctgaagaacctagttggatccctgagacccaagtaaagctggaagagaaaaccaactcta 540
Query: 121 caaagttatcccgtgtccatgctagggcatgctgtgcccccacctcacatacacgagaat 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 539 caaagttatcccgtgtccatgctagggcatgctgtgcccccacctcacatacacgagaat 480
Query: 181 aatcaataatcaggagaacacagttcaatgttacatgaagacactgctggcagaatgtta 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 479 aatcaataatcaggagaacacagttcaatgttacatgaagacactgctggcagaatgtta 420
Query: 241 agcattcttgatgaattttcccctaaccttccagccaccagtaaacactgtttcaaagac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 419 agcattcttgatgaattttcccctaaccttccagccaccagtaaacactgtttcaaagac 360
Query: 301 atgggccaagaagtcctaatcccaatttaaaaatctgagcccttcttacccccacaatcc 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 359 atgggccaagaagtcctaatcccaatttaaaaatctgagcccttcttacccccacaatcc 300
Query: 361 ttagacaacagtgcttgtctagaaattaacacctcccttcccagtgatagctcagagcct 420
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 299 ttagacaacagtgcttgtctagaaattaacacctcccttcccagtgagagctcagagcct 240
Query: 421 tcggcagtgagtttggggcaatgtgagagaacgatgcag 459
||||||||||||||||||||||| |||||||||||||||
Sbjct: 239 tcggcagtgagtttggggcaatgggagagaacgatgcag 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 19
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 459
Length of database: 859
Length adjustment: 10
Effective length of query: 449
Effective length of database: 849
Effective search space: 381201
Effective search space used: 381201
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
