Query= MSMg01no412_i03.b1 MSMg01no412_i03.b1 CHROMAT_FILE:
MSMg01no412_i03.b1 PHD_FILE: MSMg01no412_i03.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:53 2005
(532 letters)
>mm_chr9_68451463_68452390
Length = 928
Score = 926 bits (479), Expect = 0.0
Identities = 515/531 (96%), Gaps = 10/531 (1%)
Strand = Plus / Minus
Query: 5 gaattcacctgg--ctttc-gattaaataaatcaagtaaggcaggaggttagccatcacc 61
|||||||||||| | | ||||||||||||||||| |||||| ||||||||||||
Sbjct: 745 gaattcacctggacc---cagattaaataaatcaagt----caggagtttagccatcacc 693
Query: 62 ttccttcttcctctggtaatggggattctgacatttccctcaaagggatgctagtgaact 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 692 ttccttcttcctctggtaatggggattctgacatttccctcaaagggatgctagtgaact 633
Query: 122 ttaactagggctggctaaaaccccagtttggctcatggatgcctacattttggttagatt 181
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 632 ttaactagggctggctaaaaccccagtttggctcatggatgcctacattttggttagatt 573
Query: 182 cataaagataacagaaagatcttaatattgttcatactccctgctggtgaagcttaggcc 241
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 572 cataaagataacagaaagatcttaatattgttcatactccctgctggtgaagcttaggcc 513
Query: 242 tactgcatcccactgggaccagaaccacactgttcttgctagtacatttttgatagtact 301
||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||
Sbjct: 512 tactgcatcccactgggaccaaaaccacactgttcttgcaagtacatttttgatagtact 453
Query: 302 gggcaatagcttgttcagcaagagtcttcccagggtagctactgcaatcaactttctcac 361
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 452 gggcaatagcttgttcagcaagagtcttcccagggtagctactgcaatcaactttctcac 393
Query: 362 tttgggtttccactgtaaagaacctgtctgaaggtctcatgcggagaattcaatttatat 421
||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 392 tttgggtttgcactgtaaagaacctgtctgaaggtctcatgcagagaattcaatttatat 333
Query: 422 catccaaataggtagaaagtaaagtataccccactggctcctggggttgggagcagtcac 481
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 332 catccaaataggtagaaagtaaagtataccccactggctcctggggttgggagcagtcac 273
Query: 482 catatttaccttctctgtttcccattttctgagggcaaatgaattgaattt 532
||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 272 catatttaccttcactgtttcccattttctgagggcaaatgaattgaattt 222
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 928
Length adjustment: 10
Effective length of query: 522
Effective length of database: 918
Effective search space: 479196
Effective search space used: 479196
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no412_i03.g1 MSMg01no412_i03.g1 CHROMAT_FILE:
MSMg01no412_i03.g1 PHD_FILE: MSMg01no412_i03.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:29:53 2005
(439 letters)
>mm_chr9_68256147_68256985
Length = 839
Score = 849 bits (439), Expect = 0.0
Identities = 439/439 (100%)
Strand = Plus / Plus
Query: 1 cagaagaacctctaagttcaaggtctctgtgattaaaggcgtggtggcacacacctttaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cagaagaacctctaagttcaaggtctctgtgattaaaggcgtggtggcacacacctttaa 260
Query: 61 tctgggctacaccttctgctggagacctacataaggacatggaagaaggaagatttactc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tctgggctacaccttctgctggagacctacataaggacatggaagaaggaagatttactc 320
Query: 121 tttttctccttcgcctgcttgctgtgttatactgagcaactgctagatccttggacttac 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttttctccttcgcctgcttgctgtgttatactgagcaactgctagatccttggacttac 380
Query: 181 actcacagctgctgctgaccattgttgggagttggactacagactgtaagtcatcaacaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 actcacagctgctgctgaccattgttgggagttggactacagactgtaagtcatcaacaa 440
Query: 241 atttctttactatatagaaattacccataagttctgtgacgctagagaaccctgactaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 atttctttactatatagaaattacccataagttctgtgacgctagagaaccctgactaat 500
Query: 301 acactagcaaatgaaagaaaggaaagaaaagatgaacccaagtgttttatacggtaagga 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 acactagcaaatgaaagaaaggaaagaaaagatgaacccaagtgttttatacggtaagga 560
Query: 361 gatgcccacttccaaccagtgggcttagtcccttcctttgcctccactgagatcctgctt 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gatgcccacttccaaccagtgggcttagtcccttcctttgcctccactgagatcctgctt 620
Query: 421 tgcctccaggtcatgtcat 439
|||||||||||||||||||
Sbjct: 621 tgcctccaggtcatgtcat 639
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 439
Length of database: 839
Length adjustment: 9
Effective length of query: 430
Effective length of database: 830
Effective search space: 356900
Effective search space used: 356900
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
