Query= MSMg01no413_p06.b1 MSMg01no413_p06.b1 CHROMAT_FILE:
MSMg01no413_p06.b1 PHD_FILE: MSMg01no413_p06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:48 2005
(529 letters)
>mm_chr9_94355844_94356772
Length = 929
Score = 1023 bits (529), Expect = 0.0
Identities = 529/529 (100%)
Strand = Plus / Plus
Query: 1 gtacaggaatgaatcagacaccgaggaatgttgaaattcagctgaaatgagaatgtcttt 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 gtacaggaatgaatcagacaccgaggaatgttgaaattcagctgaaatgagaatgtcttt 260
Query: 61 atctaaattccattagacctggcacctttcagagagttgcccgacaggaacaaaactcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctaaattccattagacctggcacctttcagagagttgcccgacaggaacaaaactcaa 320
Query: 121 acactgtgtctgcaagctgcccaagctgcctttatctgaataaccttcattttcaagctg 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 acactgtgtctgcaagctgcccaagctgcctttatctgaataaccttcattttcaagctg 380
Query: 181 gtccatatcattgactttagaaaattacctgtcattcctttttttgtttcttatgtaatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtccatatcattgactttagaaaattacctgtcattcctttttttgtttcttatgtaatt 440
Query: 241 tacgttttgttattgtcaagtttaagtatcctttatgacctaacattaggactctcctat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tacgttttgttattgtcaagtttaagtatcctttatgacctaacattaggactctcctat 500
Query: 301 aggcattatcttaatctccctaagcataccagtgcaaggatgaaaaagagattctgagtt 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aggcattatcttaatctccctaagcataccagtgcaaggatgaaaaagagattctgagtt 560
Query: 361 gacaaagactgcttgattctctgttctccaacattcaagaatgactcgtctccaaagctg 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gacaaagactgcttgattctctgttctccaacattcaagaatgactcgtctccaaagctg 620
Query: 421 agtgtgtgtgctcctgaaaaatatgttaaagcccaattgaaaatctacattctgtgagct 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 agtgtgtgtgctcctgaaaaatatgttaaagcccaattgaaaatctacattctgtgagct 680
Query: 481 gaatggaaagtactcatctccaggttaaactttaacagaaacagaagga 529
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 gaatggaaagtactcatctccaggttaaactttaacagaaacagaagga 729
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 28
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 529
Length of database: 929
Length adjustment: 10
Effective length of query: 519
Effective length of database: 919
Effective search space: 476961
Effective search space used: 476961
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no413_p06.g1 MSMg01no413_p06.g1 CHROMAT_FILE:
MSMg01no413_p06.g1 PHD_FILE: MSMg01no413_p06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:31:48 2005
(487 letters)
>mm_chr9_94556835_94557723
Length = 889
Score = 766 bits (396), Expect = 0.0
Identities = 467/492 (94%), Gaps = 8/492 (1%)
Strand = Plus / Minus
Query: 1 atcttgccagtccagggcaaggttctttacactacagggctgtgaagtccatgcttatac 60
|||| |||| ||||||||||||||||||||||||||| |||||| |||||||||||||||
Sbjct: 614 atctcgccaatccagggcaaggttctttacactacagagctgtgcagtccatgcttatac 555
Query: 61 cctgagctgtgtcaacttaagaactcagagtgactgtggcagctccagccatcacattaa 120
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 554 cctgagctgtgtcaacttaagaactcagagtgactgtggcagctccagctatcacattaa 495
Query: 121 gagagaaaatgacacaaagatgttgtgtcttccctttgccacagt-gaaaactccatg-- 177
||||||||||||||||||||||| ||||||||||||||||||||| | ||||||||||
Sbjct: 494 gagagaaaatgacacaaagatgtcgtgtcttccctttgccacagtag-aaactccatgag 436
Query: 178 -tgaactccagctgcctgtgtattctattctacaggcctgactgactgcctgcagacatg 236
|||||||||||| ||||||||||||||||||||||||| ||||||||||||||| |||
Sbjct: 435 aagaactccagctgactgtgtattctattctacaggcctggctgactgcctgcagatatg 376
Query: 237 tctcctggagacatgtctggagtgccacagagaggtcaatgtacaagggccaccatgata 296
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 375 tctcctggagacatgtctggagtgtcacagagaggtcaatgtacaagggccaccatgata 316
Query: 297 tcctttgctga-atctcaaaacctgtgtggaatgcctctgcctcacgcacataaaggttc 355
|||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 ccctttgctgaga-ctcaaaacctgtgtggaatgcctctgcctcacgcacataaaggttc 257
Query: 356 actcctggggagagactgcaacttggagtccctgagtggtgcactacaaaaggcattgcg 415
||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||||
Sbjct: 256 actcctggggagagactgcaacttggagt-cctgaatggtgcaccacaaaaggcattgca 198
Query: 416 ctacaaaagcctgcagaacagtggcaggcccctccttcccgatccagcctacagcctgtg 475
||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 197 ctacaaaagcccgcagaacagtggcaggccccttcttcccgatccagcctacagcctgtg 138
Query: 476 agatgtcccttc 487
||||||||||||
Sbjct: 137 agatgtcccttc 126
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 4
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 487
Length of database: 889
Length adjustment: 10
Effective length of query: 477
Effective length of database: 879
Effective search space: 419283
Effective search space used: 419283
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
