BAC Information

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BAC

Clone NameMSMg01-419H11
Chromosome9 (Build37)
Map Location 76,992,100 - 76,992,429
singlet/doubletsinglet
Overlap gene2310046A06Rik
Upstream geneGfral, Hcrtr2, C530008M07Rik, Tinag, LOC436082
Downstream gene5730403I07Rik, Lrrc1, Klhl31, Gclc, LOC100042212, Elovl5, Gcm1, LOC666353, Fbxo9, Ick
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419H11.T7 (MSMg01no419_h11.b1)MSMg01-419H11.TJ (MSMg01no419_h11.g1)
ACCAG514561AG514562
length767755
length of high quality
(start - end)
331 (135 - 465)289 (319 - 607)
definitionCHROMAT_FILE: MSMg01no419_h11.b1 PHD_FILE: MSMg01no419_h11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:01 2005CHROMAT_FILE: MSMg01no419_h11.g1 PHD_FILE: MSMg01no419_h11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:01 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
TTCCCCTTTAAAATTGTGGCGCGGTAAGAGGNNCAATTTCTCCAGAGGAG
CGNNGGATNCATTCTTTCCCCTATATTGTGNCGTCTTACCAAAACATACT
CTTTAAAATATTTCAACTTAGCACATTTATGTTCTAAGTACGACCCATAC
AAAAAGTGACATTCTTGAGCCTTATGGGAAAACTAGAGAAAAGCATTGGC
TAAAGTCAATAACCTTATGGGAAAATGTGGAGCGCATTGAGTATATTTAA
AAGACCTTGTTAGATTGTTGCAGTTACAATAGAAACCACTGAAGGGCGGT
GATGAGACAAAAGAATCAGGACTCTGGGAGGAAGGGGTAAGGGGCTCCCT
GCTCCAGTGTGGGGTCTTGAGCTCATATCTCTCGCACTCATATGTAAGAA
TAGGGGCAAAAGGGTACAGAGGAGACAGGTGGCTCTCAGGGACTTTTGGC
TCAGCCAGTCTAACCAATAGGGTGTGCTCCAGGCTCAGCAAGAAAACCTG
TCTCCCAATTAATAATAATAATAATAATAATAATANTANTAATAATAANT
AAGACCCTNGACCGAGATGCTTCTGAGGAAGACAAATGAAGCCCCACCCC
TGATTTCCTGGCCCCCCGTGCAGGGAGGTGCCTCTTGCCCCAAACCCTTC
ACATATGAAAAATTCCCTTTAAAAAAAAAATTTTTCTCCCCGGCTGCGGG
GTAAAACTATAAAAAAAAAAAAAAACTAAAAGACTCCCAATGGTTAATCT
TTTATATCCCACTTGGC
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCAGCTGAGGAAAACCGATTGGCTGAGAAGCATC
TGAAGAAGTGTTCAACATCCTTAGTCATTAGGGAAATGCAAATCAAAACA
ACCCTGAGGTCCCTGCTCACACCAGTCAGAATGGCTAAGATCAAAACTCA
GGTGACAACAGGTGCTCATGAGGATATGGTGAAAGAGAAACACTCCTCCA
TTGCTAGTGGGATTGCAAGCTGGTATAATCACTCTGGAATTCAGTTTGGT
GGTTCCCCAGATATTTGAACATATTAGTCACTGAGGACCCAGATATACCA
CTCCTGAGAATATACTCAGATGTTCCAACATGTAATAAGGACACATACTC
TACTACATTCATAGCAGGCTTATTTTTAACATATTTATAATAATTACTTA
TTTATAAATAATATATTTCATATAATATATAAAGTTTTATTGGTTATTTT
ATTTATTTACATTTCAAATGTTATCCCTCTTCCCGTTTCCCCTCCGCAAA
TGCCCTATCCCATGCCCTTCCCCCCTGCTTCTATGAAAGAGATCACCCAC
CCACCCAGCCATTCCTGCTTCAAAACACTAACATTCTCCTTAGCTGGAGT
ATCTAGCCTCCACATGACAAAGGGCCTTCCCTCCCATTGATGCCAAACAA
GGTAAATTGGATCCCTCCATGGGCACTCTTTGGTTGTGGGTTAACCTCCT
GGTAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_h11.b1 MSMg01no419_h11.b1 CHROMAT_FILE:
MSMg01no419_h11.b1 PHD_FILE: MSMg01no419_h11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:01 2005
         (331 letters)



>mm_chr9_76991900_76992629
          Length = 730

 Score =  601 bits (311), Expect = e-176
 Identities = 326/331 (98%), Gaps = 1/331 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   taagtacgacccatacaaaaagtgacattcttgagccttatgggaaaactagagaaaagc 60
           ||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 taagtacgaaccatacaaaaagtgacattcttgagccttatgggaaaactagagaaaagc 471

                                                                       
Query: 61  attggctaaagtcaataaccttatgggaaaatgtggagcgcattgagtatatttaaaaga 120
           |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 470 attggctaaagtcaataaccttatgggaaaatgtggagtgcattgagtatatttaaaaga 411

                                                                       
Query: 121 ccttgttagattgttgcagttacaatagaaaccactgaagggcggtgatgagacaaaaga 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 ccttgttagattgttgcagttacaatagaaaccactgaagggcggtgatgagacaaaaga 351

                                                                       
Query: 181 atcaggactctgggaggaaggggtaaggggctccctgctccagtgtggggtcttgagctc 240
           |||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 atcaggac-cagggaggaaggggtaaggggctccctgctccagtgtggggtcttgagctc 292

                                                                       
Query: 241 atatctctcgcactcatatgtaagaataggggcaaaagggtacagaggagacaggtggct 300
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 291 agatctctcgcactcatatgtaagaataggggcaaaagggtacagaggagacaggtggct 232

                                          
Query: 301 ctcagggacttttggctcagccagtctaacc 331
           |||||||||||||||||||||||||||||||
Sbjct: 231 ctcagggacttttggctcagccagtctaacc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 16
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 331
Length of database: 730
Length adjustment: 9
Effective length of query: 322
Effective length of database: 721
Effective search space:   232162
Effective search space used:   232162
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)