BAC Information

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BAC

Clone NameMSMg01-419M10
Chromosome9 (Build37)
Map Location 24,698,562 - 24,698,796
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040893, Npsr1, Dpy19l1, Cypt4, Tbx20, LOC666251
Downstream geneLOC100040960, Herpud2, LOC666297, 9130004C02Rik, Sept7, EG666327, 2310005P05Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-419M10.T7 (MSMg01no419_m10.b1)MSMg01-419M10.TJ (MSMg01no419_m10.g1)
ACCAG514797AG514798
length790735
length of high quality
(start - end)
325 (113 - 437)245 (70 - 314)
definitionCHROMAT_FILE: MSMg01no419_m10.b1 PHD_FILE: MSMg01no419_m10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:25 2005CHROMAT_FILE: MSMg01no419_m10.g1 PHD_FILE: MSMg01no419_m10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:25 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TCCCTTTTTTTAATTTGGGGCGCCAAANGAGNNAAATTCTCCGAGGAACN
GNGGAAATAAGGTTTCCACCCGAACATGGAAAAAACCATCCTACAGCAAC
CAATAGCCAACATCAAAGTAAATGGTGAGAAGCTGGAAGCAATCCCACTA
AAATCAGGGACTAGACAAGGCTGTCCACTCTCGCCCTACCTATTCAACAT
TGTACTTGAAGTCCTAGCCAGAGCAATTAGACAACAAAAGGAGATCAAGG
GGATACAAATTGGAAAGGAAGAAGTCAAAATATCACTTTTTGAAGATGAT
ATGATAGTATATATAAGTGATTCTAAAAATTCCACCAGAGAACTCCTAAG
CCTGATAAACAGCTTCAATGAAGTAGCTGGATATAAAATTAACTCAAACA
AGTCAATGGCCTTTCTGTACACCAAGGATAAACAGGCTGAGAAAGAAATT
ATGGGAACAACACCCTTCTCCATAGTCACAAATAAAATAAAATACCTTGG
CTTGACCCCAACTAACGAAGTGAATAATTTGTATGAAAAGAACTTCCAGC
CCCTTAAAAAGGAATTTAAGAAAAATCCCCTAAAAGGGAAGGAATCCCCT
CGTGCCTGGGATGGGAGGGACCAACCTTGTACAAAAGGCTATTTTGGCCC
TTAAAAACCCACTAATATATGGTGGTTCCCTCCCCAATTTCTCTTTTTTT
TTTTTCCCAACATAAATAGGGAACCCGTAGACTCCTTTGGTTACCTAAAA
CCTTTTCTTAGAATAACCTCTTCCTTGCGTAAAAAACATG
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXACTGTTATTGTAATTCTCTAATTATTTTTAA
TGGGGCAATTACTCTGCTATAGCCTTGACCAAATTCCAAAAATCTTGAAT
GATATATTCAAAGCAAATGGCTAAGTAGTATTTGCAAGAATAGCCTTTCT
TTTTTTTAGTATTCATAGACAGAGTGGGTTTAAAAAGCTAGGCAAGTTAC
CATTTATAGTTAGTTTTTTTTTAACTCTGTGTTGATCCAGTTTGGTTGAG
AACATGACCTGTAGTTCTGTCTGGCTTACTTTTACATTGGAGAAATTTTA
CATTTAAGAAGTTTTGTCCCTAATTTGTAGTTTACTTGAAAGAAAGGGTG
TGAATGTGTGTGTGCACACACGTGTGTGCGTGCATGTGAGTGAGCGTGCA
TGTGTGTGTGTGTGTGTGTGTGTGTGTGTGNNTNTTNTNTTNTTTCNNNN
TTTTTTTTTTTCTTTTTTTNTTTTTTTTTNNTTTNTTTTTTTTTTCTTTT
TTTNCCTTTCTCCCTTTTTCCCCTTCCCCCCCTCTTTCTTTCTTTTTTTC
CCCTTTTCCTCTTTTTTTTCTTCTCCTTTCTCCCTCTCNCCCCTCTTTTT
TTTTTTCTTCTCCCCCCTCCCCCCTTTCCTTTTTTCCCTCTCTCTCTTTT
TTCTCTTTCTTCTTTCCCCCCTTCTTTCTCTCTTC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no419_m10.g1 MSMg01no419_m10.g1 CHROMAT_FILE:
MSMg01no419_m10.g1 PHD_FILE: MSMg01no419_m10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:25 2005
         (245 letters)



>mm_chr9_24698308_24698952
          Length = 645

 Score =  389 bits (201), Expect = e-112
 Identities = 230/249 (92%), Gaps = 18/249 (7%)
 Strand = Plus / Minus

                                                                       
Query: 1   actgttattgtaattctctaattatttttaatggggcaattactctgctatagccttgac 60
           ||||||||||||||||||||||||||||||||||||||||||||          ||||||
Sbjct: 489 actgttattgtaattctctaattatttttaatggggcaattact----------cttgac 440

                                                                       
Query: 61  caaattccaaaaatcttgaatgatatattcaaagcaaatggctaagtagtatttgcaaga 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 439 caaattccaaaaatcttgaatgatatattcaaagcaaatggctaagtagtatttgtaaga 380

                                                                       
Query: 121 ata--gcctttctttttttt--agtattcatagacagagtgggtttaaaaagctaggcaa 176
           |||  ||    |||||||||  ||||||||||||||||||||||||||||||||||||||
Sbjct: 379 atatggc----cttttttttaaagtattcatagacagagtgggtttaaaaagctaggcaa 324

                                                                       
Query: 177 gttaccatttatagttagtttttttttaactctgtgttgatccagtttggttgagaacat 236
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 323 gttaccatttatagttagtttttttttaactctgtgttgatccagtttggttgagaacat 264

                    
Query: 237 gacctgtag 245
           |||||||||
Sbjct: 263 gacctgtag 255


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)