BAC Information

Click to search

BAC

Clone NameMSMg01-420D01
Chromosome9 (Build37)
Map Location 23,153,539 - 23,153,783
singlet/doubletsinglet
Overlap geneBmper
Upstream geneAnln, 9530077C05Rik, rp9, LOC100041870, Bbs9, LOC100040805
Downstream geneLOC100040866, LOC100040878, LOC100040893, Npsr1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-420D01.T7 (MSMg01no420_d01.b1)MSMg01-420D01.TJ (MSMg01no420_d01.g1)
ACCAG515114AG515115
length728940
length of high quality
(start - end)
245 (78 - 322)---
definitionCHROMAT_FILE: MSMg01no420_d01.b1 PHD_FILE: MSMg01no420_d01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:57 2005CHROMAT_FILE: MSMg01no420_d01.g1 PHD_FILE: MSMg01no420_d01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:39:57 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NNNCCACTATXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCGAGAGAATG
CGCGGAATTCTCTGAATTGCAATCTAGCTGCATTAAAGGATAACAAGAGT
CCTGTAATAAAAGCACACATTTCACTTTTTAAAGCCTAGCCTTTTCAATT
TCTTTATATAGGTGCTTTGTATCTGAGAGCCCTCTTCAAATGTTATGTTA
TATGCCATAGATTACTCATGTCAACTGAATTTATATTGGAGATAGAAAGA
GCTCCTGTTATCTTTGAAAGAGTGAGGAAGACGTTAGCATATATTGATAA
GGAACTGTCATTGGCCTCCATCNCTGGTTAAGTCCTTTAGGTTTAAATAT
GGAGAGCCTTGCTGCCCAAATGACTGGGAGGGCTAGAAGTGTCTCCATCA
TCTGTTTCATCCTACCTTCTCAGACAGGTGGGGGCTGCTGCACCTCTCTG
CAATGGTTTTGACCATAAAGGACATTTAAAGGGAAAGTGAATACAGCGGC
CTACTATGTCCTTGGTGCGGCCTCACACAGCTCTAGAGAACACCAGCCTA
CTTGTGGCATGCGTAAGGCGAGCATGTCAGCATGTGTTACTTTCTATAGT
GAGACCAAATGATTGTTCCCCACCCCCAAACATGCTTCCTCTTTAGGAAA
ACTAATCCTTTGTAGTTTATTTTAAAAATCTTGGGCAAAACTTACATAAA
TATATTGTGACAGCGGCCTGCCTACTGC
TGTTTTTTTCTCCCCGCTTCCCGGAAGTCCTCTTCCTCATTGACACCCCC
ACTCTTCACTCTTCCCTCCCCTTCCCCCCCTTATTCCTCTGCCTCCCCGC
CGTCCCCCCCCCCCCTGTCCCCCTTTTATATACTCAGCNTTTACCCCTCT
TTTTCCTGTGCCTATTTCTCCCTCGTAGAGCCCTCAGTACGACTCTAGGT
GTTGCACGGACTCGTCATCCCGCTCTCCTCTTTNCNTCTTTTCNCCAGTT
AAGGAGTGTACGTCCCCGTCTCCTCTCCCNCTCACCTTCACTATCATACC
CCCCGAACGCCACTGACGTTAGAGCATAGCGGCCTCACGCTCGAGCGACA
CACACCATATCACACCCCTCCCGCCTTTTCTGTTCCCCCCGCGCCACCTC
CCTTTCCGTTGTCTCACCACTCGCCCCTCTTTTCTGGGTTCCACATGTCC
GCAGTAAAACAATNTTCCACTCCTCGGGCGCCCCCAAAAATAGGGGAAAC
CAAAAACNCGGGGGCNCGGGAGATAGGAGGGTCTCTCTCCCACTGGGGTG
GGGNNNNGGGGGGGGNCCGCGGGGCCCCCTTGTAGTTTTATAGTCTTTTA
CGGGAAAAAAAAAAACAAAATTTTTTTTTTTTTTTAAGGAGCAGTTTGCC
GNAAAACAACCCCCTTTTAAAACTTATAAGAGGGCNAAAAAAAAAGGGGG
GATTGAGAGTGCCCGGTACCGGCCCNNCCCCGGGGGGGAGAATAAAAAAA
AAAATATTTTTTCTCCCCCCTTTCTGCGCCCCCCCCCCTCTTTAACCCCC
CCTNTTTTTCCCACAATAAATGTGTTGAACGCGCCCCCNTCTTTTNTTCC
CGACCAAAAAAAAATCTCCCCGCCCTTTAATAAAACATTNTTATAACAGA
AANACCCCCCCCCCCCCCTACATAATTCCTCCACAGGGGG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no420_d01.b1 MSMg01no420_d01.b1 CHROMAT_FILE:
MSMg01no420_d01.b1 PHD_FILE: MSMg01no420_d01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:57 2005
         (245 letters)



>mm_chr9_23153339_23153983
          Length = 645

 Score =  451 bits (233), Expect = e-131
 Identities = 242/245 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   ctgcattaaaggataacaagagtcctgtaataaaagcacacatttcactttttaaagcct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 ctgcattaaaggataacaagagtcctgtaataaaagcacacatttcactttttaaagcct 260

                                                                       
Query: 61  agccttttcaatttctttatataggtgctttgtatctgagagccctcttcaaatgttatg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 agccttttcaatttctttatataggtgctttgtatctgagagccctcttcaaatgttatg 320

                                                                       
Query: 121 ttatatgccatagattactcatgtcaactgaatttatattggagatagaaagagctcctg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatatgccatagattactcatgtcaactgaatttatattggagatagaaagagctcctg 380

                                                                       
Query: 181 ttatctttgaaagagtgaggaagacgttagcatatattgataaggaactgtcattggcct 240
            ||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 381 gtatctttgaaagaatgaggaagatgttagcatatattgataaggaactgtcattggcct 440

                
Query: 241 ccatc 245
           |||||
Sbjct: 441 ccatc 445


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 245
Length of database: 645
Length adjustment: 9
Effective length of query: 236
Effective length of database: 636
Effective search space:   150096
Effective search space used:   150096
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)