CAAATTTGCNNCCTANNNNNNCCCNNATCGAACTCGGCGGAATTTCTGTC
TTCCACACAGCGCGGATAAGAAAACTTAGTTCTGTCTNAAGCCAGGGTCC
TACCCCNTCCTNCNNANATTTTGNTTCTTACCCCTGGCAAATTTTAAAGN
CTCCCCNAACCCTTCCCAAACCTTTTGCTTTCACACCCCCCATAAAAATT
CCCTCNAATCCAAAACCCCCCTTTTTTTTAACNGNNCCTTTTCCTCTACC
CTTTTACCNCCCCCCCCGGNNNAACCCCTTTCTTGGGTTAAANNCCCCCC
CGCNCCCCCCCNNNACTTTTTTTCCCCCCCCACGCNCCTTTCCCCCAAAA
AATNCCAAAAAACTTCCCCCCCCTTTTCCCCGCCTTTTTTCCCCCCCCCC
CCCCCAACCCCCCANNNNNCCCCTCTTTTCCCCCTCCCNCCCCCCCATTC
TTTTCCCCCNTCCTNTTTCCCCNCCCCTCCTCCCCCCCCCCCCTNACCCC
CCCTTCCTTCCTTTTTCCCCCCATNCCCCCCCCCCCCCCCCCCCCCCCCC
NCCCCCCCCCCCCCCCCCCCCCCCCCCCCTTTTTTTTTTCCCTCTNCCCC
CCCCNTCCCCCCCTTTTTTCCCCCCTCCCCCCCCNNCCCCATCCNNCCCC
TTTCCCCTCTCCCCTTTCCCCCCCCCCNNTTCCCCCCCCATTCCTTTTTT
CTTTTTTTTTTTTTTG

ATGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXAAACTTTAAAGAAGCATGTAACATAAAAAACA
AAGGTATTAAGTATTAATTGACTCATTGTTGATTTCTTTATTTCCAGACT
TATTCTAGTTATACATGTATGCATGTGTCTGAGTCCACGGGTGCAGATAT
CTGCAAGGCTAGAAGAGGGTATCACATCCCCTGGAATGAAGTTGTAGGAG
GTTATAAACCACCAAACACGGGGGCCAAGAAGTTATCTCTGATCTTCTAC
AGCCTGGTAAGCATCATTTTCTGCTGAGCTGTCTCTCCAGTCCTGAATTC
ATCACTCTCTATAGACGTACTGACTGAGTTCAACATTGTATTCAGATCTT
TAAATATCTTCTCCTTTTAGTCCTTTGCCAGTTATCTCTCCAGAGAAGTA
TAAGAAATCAATGGTCCATTTTGGTGACTGCCGAAGCTCCCACTAATTAC
TCCCTTTTGTTTTGGTGAGCTTCCTGTGACACATAAACTTCAGAGTCTTC
AGACCCTAGTGGTGACTGTATCTTCTGCCAGCTAAAGGTTCTCCTGGGAG
AGTCTCGTGACCCCCCCGAGCCCGACCTGTAAGTACTTATCCACTTGGGA
AAAGAGAATACCCGTCAAGGAACCCTCCTTAGTACTTTTGGTTTTTAAAT
AGTTTCTGATACCCCTTTATTAGAGAAAGAAGCAA

Query= MSMg01no420_d08.g1 MSMg01no420_d08.g1 CHROMAT_FILE:
MSMg01no420_d08.g1 PHD_FILE: MSMg01no420_d08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:39:58 2005
         (554 letters)



>mm_chr9_10034693_10035646
          Length = 954

 Score =  946 bits (489), Expect = 0.0
 Identities = 538/555 (96%), Gaps = 3/555 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaactttaaagaagcatgtaacataaaaaacaaaggtattaagtattaattgactcattg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 200 aaactttaaagaagcatgtaacataaaaaacaaaggtattaagtattaattgactcattg 259

                                                                       
Query: 61  ttgatttctttatttccagacttattctagttatacatgtatgcatgtgtctgagtccac 120
           |  ||||| |||||||||||||||||||||||||||||||||||||||||||||||||| 
Sbjct: 260 tccatttcattatttccagacttattctagttatacatgtatgcatgtgtctgagtccaa 319

                                                                       
Query: 121 gggtgcagatatctgca-aggctagaagagggtatcacatcccctggaatgaagttgtag 179
           ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 320 gggtgcagatatctgcagaggctagaagagggtatcacatcccctggaatgaagttgtag 379

                                                                       
Query: 180 gaggttataaaccaccaaacacgggggccaagaagttatctctgatcttctacagcctgg 239
           |||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gaggttatgaaccaccaaacatgggggccaagaagttatctctgatcttctacagcctgg 439

                                                                       
Query: 240 taagcatcattttctgctgagctgtctctccagtcctgaattcatcactctctatagacg 299
           |||||||||||  ||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 440 taagcatcattacctgctgagctgtctctccagtcctgaattcatcactctctatagatg 499

                                                                       
Query: 300 tactgactgagttcaacattgtattcagatctttaaatatcttctccttttagtcctttg 359
           |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| 
Sbjct: 500 tactgactgagtccaacattgtattcatatctttaaatatcttctccttttagtccttta 559

                                                                       
Query: 360 ccagttatctctccagagaagtataagaaatcaatggtccattttggtgactgccgaagc 419
           |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 560 ccagttatctctccagagaagtataacaaatcaatggtccattttggtgactgccgaagc 619

                                                                       
Query: 420 tcccactaattactcccttttgttttggtgagcttcctgtgacacataaacttcagagtc 479
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tcacactaattactcccttttgttttggtgagcttcctgtgacacataaacttcagagtc 679

                                                                       
Query: 480 ttcagaccctagtggtgactgtatcttctgccagctaaaggttctcctgggagagtctcg 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 ttcagaccctagtggtgactgtatcttctgccagctaaaggttctcctgggagagtctcg 739

                          
Query: 540 tgacccccccgagcc 554
           ||||||||  |||||
Sbjct: 740 tgaccccc--gagcc 752


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 554
Length of database: 954
Length adjustment: 10
Effective length of query: 544
Effective length of database: 944
Effective search space:   513536
Effective search space used:   513536
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)