BAC Information

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BAC

Clone NameMSMg01-422I06
Chromosome9 (Build37)
Map Location 111,454,444 - 111,454,917
singlet/doubletsinglet
Overlap genenone
Upstream geneSetd2, Nradd, Nbeal2, Ccdc12, Pthr1, Myl3, 9430025E04Rik, LOC665549, Tessp2, 1700036D21Rik, Tessp3, BC107230, 1700112C13Rik, Tsp50, Tmie, Als2cl, Gm590, Tdgf1, Lrrc2, Rtp3, ENSMUSG00000057802, Ltf, Ccrl2, LOC100039275, Lrrfip2, Mlh1, Epm2aip1, Lba1, Dclk3, LOC620615
Downstream geneStac, 4930545L08Rik, Arpp21, LOC100039341, LOC620760, LOC100043800
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422I06.T7 (MSMg01no422_i06.b1)MSMg01-422I06.TJ (MSMg01no422_i06.g1)
ACCAG516886AG516887
length732751
length of high quality
(start - end)
466 (66 - 531)252 (66 - 317)
definitionCHROMAT_FILE: MSMg01no422_i06.b1 PHD_FILE: MSMg01no422_i06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:58 2005CHROMAT_FILE: MSMg01no422_i06.g1 PHD_FILE: MSMg01no422_i06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:42:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAAAATCCGCGGAATTCCCGT
GAAGTTACCAAAGACAGAGACCTTCCATGGTGGAAGCCGCAAGGAGCTGA
CGCAATAGGGATAGTGAAGAGAAACCGGAAGCACTGTCAGTCGCTCTCAT
GTGAGGAACATTTTGAGGTTCTATGCCTGCTTCCCATTTTTCATTTAAAA
AGATTTATTTTTCATTATGTGTTTGTGTGTGGGAATGTGCACACCAGTGC
TGGTCACTGTGGAGCCAGAGACAATGGATCGATCTCTTAGGAGCTGGAGT
CACAGGAGGTTGTGAATTTTTTGACACGGGTTCTAGGAACCAAACTCTGG
TCCCTGAAAGAGTGCGGATCACTCTTACTTGCTGAGACATCACAAGTCCC
CCCCTTTTATTTCTGAGAGTGAGAACTCACTAAGAATTTCTGATTGTTTC
TTTTCTAGCCTGTCAGNTTGGGGTTTTCCAAAAGTAATCTATTTTCTATA
GCTATCAGTTTTCAAATCGGAAACCCAATAGAAGTCATGTGTGCATGTGC
AGTGTTCACATGTATGTATGCATGAACTTCCGAGAACACCTAGAAACAAT
TCCATGTCCAGCACGAAAGGATGAGTTTAGGGAGTCAATAGATACGGCTT
TACTCATTTTGACTGGTCCCGTAACGCTCAAAGTGCTGAGAAACCTTATA
ATCCAGGCTTATAAAGTTGACCTGGTTTCACN
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXACGCAGTTGAATCCTTCTCAACAGTCTGTTTTACG
GGAACCTTTATAACCGTGACCCGCAGTTCTGGTTCCGGAATGAGGGATCT
TCCCTGCGCCGGTGATGGTAACTGTCCCAGGTCTTCTCGTCCCAGGTTTT
CTCGTCCCAGGTCTTCTCGTCCCAGGTCTTCTCGTCCCAGGTCTTCTCAT
CCCAGGTCTTCTCGTCCCGGGTTTTCTCGTCCCGGGTCTCAGCACCAACT
CTTACACGCGTTCGTTCTTCTGTTTCAGCAAAGACGCAACAAACCGGAAT
CTTCTGCGGCAAAAGCTTTATTGCTTACATCTTCAGGAGCCAGAGAGCAA
GAGCGCAAGAGAGAGAAAAAGAACAAGAGCAAGAAGAACTACAAGAGCAA
AAGAGAGAAAAAGAACAAGAAAGCAAGAGAGAGAAAAAGAATGGCAAAAC
CCCGTGCCTTTTAAGGAGAATTATCCTCCGCCTAGGACGTATTACTCCCT
GATTGGTTGTAGCCCATTTGGCCTTTTGTTCTCTTGAGAAAGGCAGAACA
CTTGGGGGGAAAACTGTCCCCTGGACGTGTGCATAATTATGTTTACCCCT
TATAAACCCATCTTGTTTTCTTCTTTTCTAAATAGGCGAATGTTGAGGTT
TGGCTCCCTCTCAACCTGTGGTCCCTTTTGTACTGAACCCTTTTTTCCGT
N
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_i06.b1 MSMg01no422_i06.b1 CHROMAT_FILE:
MSMg01no422_i06.b1 PHD_FILE: MSMg01no422_i06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:42:58 2005
         (466 letters)



>mm_chr9_111454252_111455117
          Length = 866

 Score =  791 bits (409), Expect = 0.0
 Identities = 455/480 (94%), Gaps = 20/480 (4%)
 Strand = Plus / Plus

                                                                       
Query: 1   agagaccttccatggtggaagccgcaaggagctgacgcaatagggatagtgaagagaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 193 agagaccttccatggtggaagccgcaaggagctgacgcaatagggatagtgaagagaaac 252

                                                                       
Query: 61  cggaagcactgtcagtcgctctcatgtgaggaacattttgaggttctatgcctgcttccc 120
           |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||
Sbjct: 253 cggaagcactgtcagtcgctctcatgtgaggaacgttttgaggttctgtgcctgcttccc 312

                                                                       
Query: 121 atttttcatttaaaaagatttatttttcattatgtgtttgtgtgtgggaatgtgcacacc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 313 atttttcatttaaaaagatttatttttcattatgtgtttgtgtgtgggaatgtgcacacc 372

                                                                       
Query: 181 agtgctggtcactgtggagccagagacaatggatcgatctcttaggagctggagtcacag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 373 agtgctggtcactgtggagccagagacaatggatcgatctcttaggagctggagtcacag 432

                                                                       
Query: 241 gaggttgtgaat----tttttgacacgggttctaggaaccaaactctggtccctgaaaga 296
           ||||||||||||    |    |||||||||||||||||||||||||||||||||||||||
Sbjct: 433 gaggttgtgaataccct----gacacgggttctaggaaccaaactctggtccctgaaaga 488

                                                                       
Query: 297 gtgcggatcactcttacttgctgagacatcacaa---gtccccccc-------ttttatt 346
           ||| ||||||||||||||||||||| ||||||||   | |||||||       |||||||
Sbjct: 489 gtggggatcactcttacttgctgag-catcacaacaagcccccccccccgcccttttatt 547

                                                                       
Query: 347 tctgagagtgagaactcactaagaatttctgattgtttcttttctagcctgtcagnttgg 406
           ||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 548 tctgagagtga-aactcactaagaatttctgattgtttcttttctagcctgtcagtttgg 606

                                                                       
Query: 407 ggttttccaaaagtaatctattttctatagctatcagttttcaaatcggaaacccaatag 466
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ggttttccaaaagtaatctattttctatagctatcagttttcaaatcggaaacccaatag 666


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 466
Length of database: 866
Length adjustment: 10
Effective length of query: 456
Effective length of database: 856
Effective search space:   390336
Effective search space used:   390336
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)