BAC Information

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BAC

Clone NameMSMg01-422L11
Chromosome9 (Build37)
Map Location 47,414,007 - 47,572,434
singlet/doubletdoublet
Overlap geneCadm1
Upstream geneEG667890, 2900052N01Rik, D930036J05
Downstream geneLOC100043303, D930028F11Rik, 4432416J03Rik, EG640268, EG434401, LOC667933, Rexo2, Rbm7, EG434402, Nnmt, Zbtb16
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-422L11.T7 (MSMg01no422_l11.b1)MSMg01-422L11.TJ (MSMg01no422_l11.g1)
ACCAG517040AG517041
length721722
length of high quality
(start - end)		249 (65 - 313)517 (68 - 584)
definitionCHROMAT_FILE: MSMg01no422_l11.b1 PHD_FILE: MSMg01no422_l11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:14 2005CHROMAT_FILE: MSMg01no422_l11.g1 PHD_FILE: MSMg01no422_l11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:43:14 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(47,572,186 - 47,572,434)(47,414,007 - 47,414,523)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAT
AGAGTTTACCAATGATTTCTCCATCTCTTTGGAGGACAGTACACATGGAA
AACATAGGAGAGTGTGGGGAAGTCAGTGAGCGTTAAGAAAAATTAAGAAC
ATTCATTAGCTGACACTTGCTTGTGAAACTGAGGAGACTCGATGGCCTGC
CACCTTCCACACACCTTCCCGATCACACCTCAGAGAGCTGCTCTGCCTAT
TTGCTAAACCACAGAAGTCTACCACTCTATTTTTAGGAATTCAATACGGT
TTCTGAAAATTTGCTGTTTCTTAGGAGTTGGGGGAGGGGACTCTCCACCT
AAACCTCAGAGAGGGAAGTAATCTAGGTGTTTAACTGGGTTCAGGGGCAG
CAAGGGGTGGAGGAGAGGTTAGGTTCTTATGCTGAGGGCTGGCTCAACCC
CAGGGCCATAGCCAGTGAATGCTTGCTCTCTTGATTTTCATCACTTGGCC
TTTCAGTTCTGTCTCTACCCTCAAGAAGAGCCCTTCCAGCGTCAGCGTCT
AATATTCTCACCTGCTCCTGGCCCTCTCTGTGCCCCAAGAGCTGCATGCA
CAAGCTGTCTAGGAAGATGTGCTTATTAGTTGGACGTATCAAGGCTTCCT
CTTTATTATTTTTGAAGTGACCACTCCTGTGGACAATCATCCCTCTCTTT
CGGATGTTAACGCCACTCCCC

TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXACTTTTATATAAATGAGAAGCATTTATATATAT
TTCTCCTATGGCCAAATACCCCGAAGGCTTTATAAAAACTTTTACTTTAT
TATTATTATTATTATTATTCACTTAATGGATGTAGTGCCATATAGTAGTA
GGTAATTACATTGGTAATAACAGTTTTTTTCCCCTAGTGGAACTCAGAGA
TGTCTAGATATTTAATCTTTATATAAGATCACACACACATCCAATAAATA
TCTGTAGTTTTATCTTATATTTATGTTCAAGATGAACCCTTTCAGAGGTG
GTAGAAAAACTCATCTCTTAGCTCCTGGGGAGAATTTTGGAAGCTCAGAT
CTGTGTCCTTTAATTTTTGATATTATTTCTTTGGATTGAAACTCAGCTCA
TTATAAATATACTTCATTCTTAATTTCTAATTAGGAAACTACTACATGAA
TATAATTTTTTTCTAAAAAATGCTTTAGATTGGGGGTGGAGCCCAGTGGT
ACAGTGCTTGCCAAGCATGCGTGAGGTTCAGTGTTCAGTGCTGCAAACAA
AGAACAAACATACCTGGATACATACACGTACATGCATACATGCATACATA
CTGACCTTCCTTTCAGAAAATCATGGAGTCCCCATTGAGGAATCTCGGGC
CCTCCCAGTTGACATCTTTTCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no422_l11.b1 MSMg01no422_l11.b1 CHROMAT_FILE:
MSMg01no422_l11.b1 PHD_FILE: MSMg01no422_l11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:14 2005
         (249 letters)



>mm_chr9_47571986_47572634
          Length = 649

 Score =  482 bits (249), Expect = e-140
 Identities = 249/249 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttctccatctctttggaggacagtacacatggaaaacataggagagtgtggggaagtc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 449 atttctccatctctttggaggacagtacacatggaaaacataggagagtgtggggaagtc 390

                                                                       
Query: 61  agtgagcgttaagaaaaattaagaacattcattagctgacacttgcttgtgaaactgagg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 agtgagcgttaagaaaaattaagaacattcattagctgacacttgcttgtgaaactgagg 330

                                                                       
Query: 121 agactcgatggcctgccaccttccacacaccttcccgatcacacctcagagagctgctct 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 329 agactcgatggcctgccaccttccacacaccttcccgatcacacctcagagagctgctct 270

                                                                       
Query: 181 gcctatttgctaaaccacagaagtctaccactctatttttaggaattcaatacggtttct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 269 gcctatttgctaaaccacagaagtctaccactctatttttaggaattcaatacggtttct 210

                    
Query: 241 gaaaatttg 249
           |||||||||
Sbjct: 209 gaaaatttg 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 249
Length of database: 649
Length adjustment: 9
Effective length of query: 240
Effective length of database: 640
Effective search space:   153600
Effective search space used:   153600
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)

Query= MSMg01no422_l11.g1 MSMg01no422_l11.g1 CHROMAT_FILE:
MSMg01no422_l11.g1 PHD_FILE: MSMg01no422_l11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:43:14 2005
         (517 letters)



>mm_chr9_47413807_47414723
          Length = 917

 Score =  984 bits (509), Expect = 0.0
 Identities = 515/517 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acttttatataaatgagaagcatttatatatatttctcctatggccaaataccccgaagg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acttttatataaatgagaagcatttatatatatttctcctatggccaaataccccgaagg 260

                                                                       
Query: 61  ctttataaaaacttttactttattattattattattattattcacttaatggatgtagtg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctttataaaaacttttactttattattattattattattattcacttaatggatgtagtg 320

                                                                       
Query: 121 ccatatagtagtaggtaattacattggtaataacagtttttttcccctagtggaactcag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ccatatagtagtaggtaattacattggtaataacagtttttttcccctagtggaactcag 380

                                                                       
Query: 181 agatgtctagatatttaatctttatataagatcacacacacatccaataaatatctgtag 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 agatgtctagatatttaatctttatataagatcacacacacatccaataaatatctgtag 440

                                                                       
Query: 241 ttttatcttatatttatgttcaagatgaaccctttcagaggtggtagaaaaactcatctc 300
           |||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ttttatcttagaattatgttcaagatgaaccctttcagaggtggtagaaaaactcatctc 500

                                                                       
Query: 301 ttagctcctggggagaattttggaagctcagatctgtgtcctttaatttttgatattatt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ttagctcctggggagaattttggaagctcagatctgtgtcctttaatttttgatattatt 560

                                                                       
Query: 361 tctttggattgaaactcagctcattataaatatacttcattcttaatttctaattaggaa 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 tctttggattgaaactcagctcattataaatatacttcattcttaatttctaattaggaa 620

                                                                       
Query: 421 actactacatgaatataatttttttctaaaaaatgctttagattgggggtggagcccagt 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 actactacatgaatataatttttttctaaaaaatgctttagattgggggtggagcccagt 680

                                                
Query: 481 ggtacagtgcttgccaagcatgcgtgaggttcagtgt 517
           |||||||||||||||||||||||||||||||||||||
Sbjct: 681 ggtacagtgcttgccaagcatgcgtgaggttcagtgt 717


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 30
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 517
Length of database: 917
Length adjustment: 10
Effective length of query: 507
Effective length of database: 907
Effective search space:   459849
Effective search space used:   459849
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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