BAC Information

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BAC

Clone NameMSMg01-425H02
Chromosome9 (Build37)
Map Location 55,281,270 - 55,281,614
singlet/doubletsinglet
Overlap geneAI118078
Upstream geneDmxl2, 4933412E14Rik, Cib2, Idh3a, Acsbg1, LOC100039151, EG664850, Dnaja4, Wdr61, Crabp1, Rab7-ps1, Ireb2, C630028N24Rik, AY074887, Psma4, Chrna5, Chrna3, Chrnb4, EG640554, LOC664897, 1700071A11Rik, Ube2q2, Fbxo22, Nrg4
Downstream geneEtfa, LOC546133, Isl2, Zfp291, LOC664980, 4930563M21Rik, LOC664995, LOC665005, Rcn2, Pstpip1, Tspan3, C230081A13Rik, Hmg20a
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425H02.T7 (MSMg01no425_h02.b1)MSMg01-425H02.TJ (MSMg01no425_h02.g1)
ACCAG519124AG519125
length758764
length of high quality
(start - end)
345 (60 - 404)386 (67 - 452)
definitionCHROMAT_FILE: MSMg01no425_h02.b1 PHD_FILE: MSMg01no425_h02.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:39 2005CHROMAT_FILE: MSMg01no425_h02.g1 PHD_FILE: MSMg01no425_h02.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCAT
GTGTCTGAGTAGTGAGGGTGGCTGAGGAAGACTCACACCGCAGAGCCTGA
GAGGCTGTGCCCATTCTCCCGCTCCTCTATGGCGCAGCAGCACTCCCTGA
GAAGATGCTGGCATCCCCAGGGTACCTGCTGCATGCCATGCCTGGGGCTA
GTGCACACAACGGAACCCCCAGGCTTTCCCAGGGAAGAGCTTCCGGGGCT
CTGAGACCAGACAAGCTGTTGGACTGAGTAGCTTTAAAAAGCACCAAAAC
TGGCTTTTTGGACGGTGATAGCAAGAGGGCGAGATGTAGCTACTATCATC
TCCCCGGTTTATATGCTGAATCCACTAGGATTCACCACCGGAGGATTTAT
ATTTATCACCCCCCACAAGATTAGGATTCTAGCTGTTGCGCCCAGCGATC
GAGTTACTATTGTGCCTGACTTACCCCCACTCCAATTAAGCACCAAAACT
ACCATCAGAACACAAGCTTTGACGTTAGTCCCATTCCCTTCCATTACTGT
CTACGTCCGCCATTTTACTTTATTCACGTCACCTACATCTTGCCCTTTTT
CATTACTTCCCCCCATCCTTTTTTTTCCTCCCTTCATTTCCTCCTCTGTG
CTATCTTTTTCCATCTTTCACATTCCTCTTCCATTTTCTTCCTTTTTTTA
TTTCCCCCCTCCCTTTCTTTTTCTCCCCGTCTCTTTTCTCCGTACTCTCC
CGCTTTCC
GTGTGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXTCCTTTCCTGAATTAAAAATTAACTATAAAACTA
CAATATCAAATACTGTGATAAGGGCTGGCAGGTTTGCTCAGTGGAAAAGG
GTGGTTTCCATTGAGCGGGGTAGCGTGAGTTTGATTCCTAGATCCCACAT
GGTGGAAAGAGCCAAGTCTGACCTCCATACATGCCATGGCATGCACACTC
CCTCCCATATAAATAAATGTTAAACAATTAAAATGTGATAAAAATGTAAG
TGCAGGGGACTGGAGAGATGGCTCAGTGGTTTGGAGCACTGGTTGCTCTT
ACAGAGGACCTAGGTTCTAGTCTCATCATTCACATGGTGGCTTGAGACCA
TCTATAACTACCGTTCTAGGGGATATGATACTTCTTTTGATCTTCTGGGG
CACTAGGAACACATGGTGCACACATATACTCACATACTGCGGCGGCTTGA
ATATGCTTGTCCCTGTTAGTGTTATTATTTGTAGTCATGCCCTTGTTGCA
TCTATTTTGTCTTCTGTGTTCCTGTTTACCCCCTTTCTTCTCCCTCTCTC
TCCTTCACCTTACCCCATTTCATGCCCTCTATATCTTTCTACTTTGCTCT
ATTTATTCTCTCCCTTTATTTATTCATTCTCTTTTCTTTTTTAACTTTAT
CTTTCCTCTTTCATATCTCTCTCTTTCTTTCTCCTCCCACTTCTCCTTAT
TCTTCCTCTCTTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_h02.b1 MSMg01no425_h02.b1 CHROMAT_FILE:
MSMg01no425_h02.b1 PHD_FILE: MSMg01no425_h02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:39 2005
         (345 letters)



>mm_chr9_55281171_55281915
          Length = 745

 Score =  621 bits (321), Expect = 0.0
 Identities = 339/345 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   tagtgagggtggctgaggaagactcacaccgcagagcctgagaggctgtgcccattctcc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 tagtgagggtggctgaggaagactcacaccgcagagcctgagaggctgtgcccattctcc 385

                                                                       
Query: 61  cgctcctctatggcgcagcagcactccctgagaagatgctggcatccccagggtacctgc 120
           |||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||
Sbjct: 384 cgctcctctatggcacagcagcattccctgagaagatgctggcatccccagggtacctgc 325

                                                                       
Query: 121 tgcatgccatgcctggggctagtgcacacaacggaacccccaggctttcccagggaagag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tgcatgccatgcctggggctagtgcacacaacggaacccccaggctttcccagggaagag 265

                                                                       
Query: 181 cttccggggctctgagaccagacaagctgttggactgagtagctttaaaaagcaccaaaa 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 cttccggggctctgagaccagacaagctgttggactgagtagctttaaaaagcaccaaaa 205

                                                                       
Query: 241 ctggctttttggacggtgatagcaagagggcgagatgtagctactatcatctccccggtt 300
           |||||||||||||||| ||||||||||||| ||||||||||||||| |||||||||||||
Sbjct: 204 ctggctttttggacggggatagcaagagggtgagatgtagctactagcatctccccggtt 145

                                                        
Query: 301 tatatgctgaatccactaggattcaccaccggaggatttatattt 345
           |||||||||||||||||||||||||||||||||||||||| ||||
Sbjct: 144 tatatgctgaatccactaggattcaccaccggaggatttagattt 100


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 345
Length of database: 745
Length adjustment: 9
Effective length of query: 336
Effective length of database: 736
Effective search space:   247296
Effective search space used:   247296
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)