BAC Information

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BAC

Clone NameMSMg01-425H06
Chromosome9 (Build37)
Map Location 90,496,365 - 90,496,858
singlet/doubletsinglet
Overlap genenone
Upstream geneAF529169, Tmed3, B230218L05Rik, Rasgrf1, Ctsh, Morf4l1, LOC621414, Adamts7, Tbc1d2b, LOC100039777
Downstream geneLOC100039925, EG434428, LOC621576, Zic1, Zic4
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-425H06.T7 (MSMg01no425_h06.b1)MSMg01-425H06.TJ (MSMg01no425_h06.g1)
ACCAG519132AG519133
length741772
length of high quality
(start - end)		533 (67 - 599)423 (69 - 491)
definitionCHROMAT_FILE: MSMg01no425_h06.b1 PHD_FILE: MSMg01no425_h06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:40 2005CHROMAT_FILE: MSMg01no425_h06.g1 PHD_FILE: MSMg01no425_h06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:46:40 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXTCCCAGAGAAGCGCGGAATTCAT
AGAAATTTCAATGGAAGTCCTTGTTTAAATGCAGATATTGAAATATAGGA
GTAGGTTTCGTTAGGACTCTGTGCAATAGCTTCCTATGGCCATTAACAAA
GGACACACCCAGGATATGATCCTTTTGAATTCAAACATAGTGGTACCAGT
TGGAATAGGAGACTTGTACAAGAGAACCCTTCAGCCTTACGATGTATCAC
TTCCTATCTTCTATTCTCCTGTGTTGATTACAGATTAATTTGAGCACAAC
AATTTCTGCATCTTTCTATTGTGGGCCAAACGATGGCAGGAACACATGAA
GGCTTAGAGCAGTGGTTCCCAACCTCCCTAAGGTTTTCAGTTCCTCATGT
TGTGGCGATCCCCCAACCATAAAATTGTTTTTATTGCTACTTCATAACTG
TAATTTTGCTACTGTTATGAATCACAATATAAAAATATGATATGTGACTG
CCAAAGAGGTTGTGACCCATAGGTTGAGAACCTCTAGCCTAGCAGCTACT
TCAAGACATATTTTGTAGCTATAAAACAACACTCAACACTAAAGTAAGGC
ACAAAAAGGGAAGCTTATGAAATGATTCAACTTAATTTTTAGAGAATGAA
AGGCAATACTATTTTTGCTCTTAACCTCATCCTAACCACCTGTTTACAAA
GGCCCTACTATACCCCCTATGGAATTATTAACTACAACCTG

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXTTTCTTCTCAAGTGGGCCTTTTGTCCAATTAG
ACTGCTTCTTGTTACCCTCAGGATAGAACTGCTACTGTTGTATCTTTTGG
AATTTCTTGCTGTTCTGAATGCTGTCATAGATCATAGGCCTTTCAGCTGA
GGAGGATCGTTGATGGCTCTTTTCCCTGGGAAGCTTGCATAACTCCTGGT
AGTACGAGAGTTAGTCCTCAGGGAGGAGTCTTTCAGGTTATTAAGCTTGA
TCTTTCCAAGATTGTCTCTTTAGCAGTTGAGTCTTACTTTCGATTTCTGG
GGACAATCAATGGCCTGTAACTTTTGGGGAGGTTCTCTTGGACTTTTTTG
ACCAACAATTCAAAAGGAGATAAGTCATGCCTAGAGATGAGGGTTTTTGC
TACATAACTTATGGATTTTGTGGAAGTATTGTCACCTCTTAATGGAGACT
TCTGTCTTCGTCCCCCCTCTCTCTATTGCTCTCTCTCTCTCTGACTATTG
CTTTCTCTCTGTCCATTGCTCCCTTCTCTCATACCCCTATGTATACTATA
TTTTCTATCCCTTAATTGCGCCATTAAAAGAATTCTCTGGTTGCCTTTTT
CAGAAAGTTCTCCCTCGTTAATTTCTTATTTCCATTGGCCTTTTTCCTTA
TATTTTGGCCCTCCCGCTAATAATTTCTTCTCTCCACTCCCCCCCCAATT
TCTCATCTCCCGCTTGCTATTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no425_h06.b1 MSMg01no425_h06.b1 CHROMAT_FILE:
MSMg01no425_h06.b1 PHD_FILE: MSMg01no425_h06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:46:40 2005
         (533 letters)



>mm_chr9_90496365_90497298
          Length = 934

 Score =  855 bits (442), Expect = 0.0
 Identities = 476/494 (96%), Gaps = 13/494 (2%)
 Strand = Plus / Minus

                                                                       
Query: 1   gtccttgtttaaatgcagatattgaaatataggagtaggtttcgttaggactctgtgcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 494 gtccttgtttaaatgcagatattgaaatataggagtaggtttcgttaggactctgtgcaa 435

                                                                       
Query: 61  tagcttcctatggccattaacaaaggacacacccaggatatgatccttttgaattcaaac 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 434 tagcttcctatggccattaacaaaggacacacccaggatatgatccttttgaattcaaac 375

                                                                       
Query: 121 atagtggtaccagttggaataggagacttgtacaagagaacccttcagccttacgatgta 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 374 atagtggtaccagttggaataggagacttgtacaagagaacccttcagccttacgatgta 315

                                                                       
Query: 181 tcacttcctatcttctattctcctgtgttgattacagattaatttgagcacaacaatttc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 314 tcacttcctatcttctattctcctgtgttgattacagattaatttgagcacaacaatttc 255

                                                                       
Query: 241 tgcatctttc-tattgtgggccaaacgatggcaggaacacatgaaggcttagagcagtgg 299
           |||||||||| ||  |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 254 tgcatctttcttacagtgggccaaacgatggcaggaacacatgaaggcttagagcagtgg 195

                                                                       
Query: 300 ttcccaacctccctaagg----------tt--ttcagttcctcatgttgtggcgatcccc 347
           ||||||||||||||||||          ||  ||||||||||||||||||||||||||||
Sbjct: 194 ttcccaacctccctaaggtggagaccctttcattcagttcctcatgttgtggcgatcccc 135

                                                                       
Query: 348 caaccataaaattgtttttattgctacttcataactgtaattttgctactgttatgaatc 407
           |||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 134 caactataaaattgttttcattgctacttcataactgtaattttgctactgttatgaatc 75

                                                                       
Query: 408 acaatataaaaatatgatatgtgactgccaaagaggttgtgacccataggttgagaacct 467
           ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 74  acaatataaaaatctgatatgtgactgccaaagaggttgtgacccataggttgagaacct 15

                         
Query: 468 ctagcctagcagct 481
           ||||||||||||||
Sbjct: 14  ctagcctagcagct 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 533
Length of database: 934
Length adjustment: 10
Effective length of query: 523
Effective length of database: 924
Effective search space:   483252
Effective search space used:   483252
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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