Query= MSMg01no425_m13.b1 MSMg01no425_m13.b1 CHROMAT_FILE:
MSMg01no425_m13.b1 PHD_FILE: MSMg01no425_m13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:05 2005
(537 letters)
>mm_chr9_110432020_110432956
Length = 937
Score = 1025 bits (530), Expect = 0.0
Identities = 535/537 (99%)
Strand = Plus / Plus
Query: 1 agtgtggagattanaggtatgagccaccatgccttataacatacattttctttgtcttga 60
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 agtgtggagattaaaggtatgagccaccatgccttataacatacattttctttgtcttga 260
Query: 61 gttcaaactgggtgtggtgatatctcttgaatataaactgggtgtggtggtatgtaatcc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 gttcaaactgggtgtggtgatatctcttgaatataaactgggtgtggtggtatgtaatcc 320
Query: 121 tagtacttgggatacagcaaaccagattccagagaatcctgaacaccatctcaaaggtgc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tagtacttgggatacagcaaaccagattccagagaatcctgaacaccatctcaaaggtgc 380
Query: 181 tgacctttttaaaaaagatttgaatcaaagatttgtgggcctcaaaatttccactgacct 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tgacctttttaaaaaagatttgaatcaaagatttgtgggcctcaaaatttccactgacct 440
Query: 241 ccatggtttgatatgcttactctattgggttctgaccaaagttaccactagactgaagta 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 ccatggtttgatatgcttactctattgggttctgaccaaagttaccactagactgaagta 500
Query: 301 ccattcatctgtctcatgttagagagctgtttactttattaaggaaatgggaaacccata 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ccattcatctgtctcatgttagagagctgtttactttattaaggaaatgggaaacccata 560
Query: 361 cacctcatcttaggttcctctcaacttagtatccatgcaaagtaaccctttcctaatgtc 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 cacctcatcttaggttcctctcaacttagtatccatgcaaagtaaccctttcctaatgtc 620
Query: 421 aagtggctgccaatggcttatgtgacatttaaggcaaagagctccaatatattcaaaata 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 aagtggctgccaatggcttatgtgacatttaaggcaaagagctccaatatattcaaaata 680
Query: 481 tagctgggcatgatagcacactagagactcaggaagagagcttcacgctctaggcaa 537
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 681 tagctgggcgtgatagcacactagagactcaggaagagagcttcacgctctaggcaa 737
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 537
Length of database: 937
Length adjustment: 10
Effective length of query: 527
Effective length of database: 927
Effective search space: 488529
Effective search space used: 488529
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no425_m13.g1 MSMg01no425_m13.g1 CHROMAT_FILE:
MSMg01no425_m13.g1 PHD_FILE: MSMg01no425_m13.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:05 2005
(495 letters)
>mm_chr9_110585787_110586681
Length = 895
Score = 772 bits (399), Expect = 0.0
Identities = 458/495 (92%), Gaps = 29/495 (5%)
Strand = Plus / Minus
Query: 1 aagtgtgacggggatccttaccccaggtacctggtcagactcgaggggcaacggccacac 60
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 780 aagtgtgacggggatccttaccccaggtacctggtcagactcgaggggcaac-gcc---- 726
Query: 61 acacacacacacacacacacacacacacacacacacacacacacacacacacaccaggtt 120
| | | | | | |||||||||||||||| ||||||||
Sbjct: 725 -----------------------c-cccccccccccacacacacacacacataccaggtt 690
Query: 121 tgagagggtacagctttctggagaaaagcccagaatgcttttggattcttagagggcaag 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 689 tgagagggtacagctttctggagaaaagcccagaatgcttttggattcttagagggcaag 630
Query: 181 gttggaagggggcaatggcacacagacccagaacaaggaagggatggtattgacagcatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 629 gttggaagggggcaatggcacacagacccagaacaaggaagggatggtattgacagcatg 570
Query: 241 acaagaggcagtggctctctaggtggctggggagagtctccaaagtacacctcccttgtc 300
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct: 569 acaagaggcagtggctctctaggtggctggggagagtctctaaagtacacctcccttgtc 510
Query: 301 ctgcctgttaaagaatgaatgggaggggcagggggcagagggagggcagaacagggaaca 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 509 ctgcctgttaaagaatgaatgggaggggcagggggcagagggagggcagaacagggaaca 450
Query: 361 actggtacagatgggtgagcacacgtcctttccagtgcccagggcttcaccctccccagc 420
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 449 actggtacagatgggtgagcacacgtcctttccagtgcccaggacttcaccctccccagc 390
Query: 421 agcagcaggaaataaccaactggaaggttaggcagagggcacagcacaaaccacagcccc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 389 agcagcaggaaataaccaactggaaggttaggcagagggcacagcacaaaccacagcccc 330
Query: 481 ctttccctttccagg 495
|||||||||||||||
Sbjct: 329 ctttccctttccagg 315
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
