BAC Information

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BAC

Clone NameMSMg01-426B15
Chromosome9 (Build37)
Map Location 13,428,301 - 13,428,746
singlet/doubletsinglet
Overlap geneMaml2
Upstream geneLOC100039680, LOC665285, LOC100039729, LOC100039758
Downstream geneMtmr2, Cep57, 2810485I05Rik, LOC665329, Sesn3, Endod1, LOC665351, EG547035, Jmjd2d, 0610040D20Rik, Amotl1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-426B15.T7 (MSMg01no426_b15.b1)MSMg01-426B15.TJ (MSMg01no426_b15.g1)
ACCAG519625AG519626
length8001,160
length of high quality
(start - end)
450 (41 - 490)---
definitionCHROMAT_FILE: MSMg01no426_b15.b1 PHD_FILE: MSMg01no426_b15.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:30 2005CHROMAT_FILE: MSMg01no426_b15.g1 PHD_FILE: MSMg01no426_b15.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:47:30 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTC
CCTCCTATGCGTTTCAGACATGGAGAATTCTAAACCAAATATAGAATCCA
TTTGAGTTGCTTAGATCCAATGTTAGGACAGAAATATTCACACTTTCAGG
CATCTGGCCATATGGCTTTGAAAAAGAATGCATTTTTAGTTCAACAGGGA
ATATCTTTTGGAAATATAAAACATTTTGAGTGCTGATAAGCCAATAAGTT
GGGAGGAATCACTCCGTGCAAAGACATTGGCTGCTGTGTAAGAGAGACCT
GTAGCCCGAAGTGCTCCTAGCATGCCTGCCACTTCTTAAGGTTGCTGTAA
AAAGATGAATACTTTCTTGGCATACTTATTGAGATGGTGGAAATGGTCTA
GACCATTGGAAGATGTTTGTGGATTTGGCGATCAGCATACATTGGTGGAC
TTGAATCCTGGAAGCTAGGATGAGATTGGAGAGAGGAGGATCCAGAGATC
TGTGCAGCTGATGGGACCAGAAGTAGGTCTAGCCTTAAAAGGGAGGATGC
GGGGGGTGGGGCCCCCCTAGTTAAATTTCCCACTGTAAAATGTGCCTTTT
CTAAGTGGATCGCTATTTCTCTTGGGAAGTTCCCGGTTGACCCTATTTTT
TTACAACACCCTTTTGTTTATCCCCTTCGCGTGTCAAACCTTAAAATACT
TGTTCCCCAAATATCTTGCCCCCTCTTCAGTTATATTGTCAGCGGTCCAA
ATTTTATTTCTGCCTTTTTGTGCCCTCTCTTGGTCTTATTCTCCCCACTG

TTTTTGGGGTAAGGCCCTGGGNNCGGCCCCGCCCTGGGCCCTCTCCGACA
TTNNNTAGGTNGGACACTANTAGNNNAAGGATCTTCTGCGGNNAATTCAT
NTNNACAAGGNACATTGGATNGGGGNNAAAACTGGNNAACANGTNCTNGN
NAATAATNCCAATTTGGTANGNAAGAANNAGGGAAAGGATGGGAAGAAAC
CATGGGGCTTGGNCCTGTNNTCTNGAGNNNAGACGCTNGCCCCTCCCGGG
NNGCACCCTCCCAGGGGGGAANNANGTGGCTTCANCTTTTGGATNANNTC
NNNNNCACAGGNAAAGCCCTCCCTGTAAACGTCCNCCGNTNNNNNNNAAG
TNNNGCTGGGCGTCGGGGGGGGGGGTCTGGGGGGGGTGGNNNTCTTGACG
TGTGCTGTATATGCTGTGGNNNNNNNTTGGNNNNNNNNNNNNNNNNNTGN
TNNNNNTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNACTAGAGTCA
GATATTGTTTNNNTCGGGGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNTTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNTNNNNNNNNNNNNNNNNNNNTNTNTTTNTTNNTTTA
TTATATTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no426_b15.b1 MSMg01no426_b15.b1 CHROMAT_FILE:
MSMg01no426_b15.b1 PHD_FILE: MSMg01no426_b15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:47:30 2005
         (450 letters)



>mm_chr9_13428097_13428946
          Length = 850

 Score =  847 bits (438), Expect = 0.0
 Identities = 444/446 (99%)
 Strand = Plus / Minus

                                                                       
Query: 5   gaattccctcctatgcgtttcagacatggagaattctaaaccaaatatagaatccatttg 64
           ||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 650 gaattccctcctaggagtttcagacatggagaattctaaaccaaatatagaatccatttg 591

                                                                       
Query: 65  agttgcttagatccaatgttaggacagaaatattcacactttcaggcatctggccatatg 124
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 590 agttgcttagatccaatgttaggacagaaatattcacactttcaggcatctggccatatg 531

                                                                       
Query: 125 gctttgaaaaagaatgcatttttagttcaacagggaatatcttttggaaatataaaacat 184
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 530 gctttgaaaaagaatgcatttttagttcaacagggaatatcttttggaaatataaaacat 471

                                                                       
Query: 185 tttgagtgctgataagccaataagttgggaggaatcactccgtgcaaagacattggctgc 244
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 tttgagtgctgataagccaataagttgggaggaatcactccgtgcaaagacattggctgc 411

                                                                       
Query: 245 tgtgtaagagagacctgtagcccgaagtgctcctagcatgcctgccacttcttaaggttg 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tgtgtaagagagacctgtagcccgaagtgctcctagcatgcctgccacttcttaaggttg 351

                                                                       
Query: 305 ctgtaaaaagatgaatactttcttggcatacttattgagatggtggaaatggtctagacc 364
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 ctgtaaaaagatgaatactttcttggcatacttattgagatggtggaaatggtctagacc 291

                                                                       
Query: 365 attggaagatgtttgtggatttggcgatcagcatacattggtggacttgaatcctggaag 424
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 290 attggaagatgtttgtggatttggcgatcagcatacattggtggacttgaatcctggaag 231

                                     
Query: 425 ctaggatgagattggagagaggagga 450
           ||||||||||||||||||||||||||
Sbjct: 230 ctaggatgagattggagagaggagga 205


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space:   369600
Effective search space used:   369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)