NNTTTTATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXCGCGGAATTCACTGAATGACTCATTTCAAAGTTTAAAAATCTTGATAT
ATTTTCAGTCCATCCCCCATCAATTGCTAGAGACCTGTGTAAAGAAAGAT
GAGCTAGTGCTTTTACATAAATCTAAGCAACTCAGTGGAATGGAACAGAC
CACCTGGTGCTGAAAATTAGTTCTTGCCTCTTTCTCTCAATACTGAATTT
CCAGAAAAATGAGAGGCAATTCTGATAACTCAATATTGTCATTTCTAGAG
CTTTATTTAAAAAAAAAGCTGCTACTCTGGTATAGCTCCGTGTACAACAC
GTGCCTACCCATGAATTGCCTAGGTTTGATCCCTAGCATTTAAACACATG
CTTCCCCTATGCATTCCAAACCCCCACCCTCAGTGTTGTATGTTCTCAGG
TGAGATAGTGACACTCAATATACTCTATAACACACAGAATCACACAGAGT
CTTGTTTGTAGAACATTTACATACACTATGTTTTTATATATAAAAGGAGA
TGTTTGAATTGTATTCAAAAGCTTGATAGGGATTATAATAGTTTTACTTA
GTTTCTTTTCATGCTACCATCTTTAAAGCTTTCCTATATTATCTTTCCCA
ATGGGAGAACCTTCATTTCCTTAGCTCTGCTTTGCAATCCATCATTCCTT
GAAGTCTTGCTTTAGCAAATACTTTTATGCAAAAAAAAGAATTCTTCCCT
ATCCATAA

NNNNCCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAGGCCCATATATAAACAG
AATAAAAGCAATATGCAGCAAACCAATAGCTAATATCAAATTAAGTGGAG
AGAAACTTGAAGCAATCCCACTAAAACCAGGGGCATGAAAAGACTGTCCA
CGCTCTCCTTATTTATTTGATGTAGTACTTGAAATCCTAGCTAGGGGAAT
TAGCAAAAAAAAAAAAAAAGAAAAGAAAAGAAAAAGGAGGTCAAAGGGAT
ACAAATTGGAAAGGAAGAAGTCAAGATATCACTGTTTGAAGATGATATGA
TAGAATACTTAAGCAACCACAAAAATCCTAGTAGAGAACTCCTACAGCTG
ATAAAGAACTTCAGCAAAGTGCCTGGATAGAAAATTAACTCAAACAAACC
AGTAGATGCTTGCTAGGATGTAGAGAAAGAGGAACACTCCTCCATTGCTG
GTGGGACTGCCAGCTGGTACAACCACTCTGGAAAACAATCTGTCAGTTCC
TCAGAAAATTCAAAATAGTTCTACCTGGAGACCCAGCTATACCCAAAAGA
TGCTCCAACATATAACAAGGACACATGCTCCACTATGTTTATGGCAGCCT
TATTTATAACCAGACGCTGCAAACAACCCAGATGTCCCCTCAAGGAAAGA
ATTGATACACAAAATGTGGGACATTTACCCCGGGGAGGACTACTCCGATA
TTAGAAAAAN

Query= MSMg01no427_e13.b1 MSMg01no427_e13.b1 CHROMAT_FILE:
MSMg01no427_e13.b1 PHD_FILE: MSMg01no427_e13.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:49:07 2005
         (556 letters)



>mm_chr9_33077962_33078918
          Length = 957

 Score = 1062 bits (549), Expect = 0.0
 Identities = 555/557 (99%), Gaps = 1/557 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   atttcaaagtttaaaaatcttgatatattttcagtccatcccccatcaattgctagagac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 757 atttcaaagtttaaaaatcttgatatattttcagtccatcccccatcaattgctagagac 698

                                                                       
Query: 61  ctgtgtaaagaaagatgagctagtgcttttacataaatctaagcaactcagtggaatgga 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 697 ctgtgtaaagaaaggtgagctagtgcttttacataaatctaagcaactcagtggaatgga 638

                                                                       
Query: 121 acagaccacctggtgctgaaaattagttcttgcctctttctctcaatactgaatttccag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 637 acagaccacctggtgctgaaaattagttcttgcctctttctctcaatactgaatttccag 578

                                                                       
Query: 181 aaaaatgagaggcaattctgataactcaatattgtcatttctagagctttattt-aaaaa 239
           |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct: 577 aaaaatgagaggcaattctgataactcaatattgtcatttctagagctttatttaaaaaa 518

                                                                       
Query: 240 aaaagctgctactctggtatagctccgtgtacaacacgtgcctacccatgaattgcctag 299
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 517 aaaagctgctactctggtatagctccgtgtacaacacgtgcctacccatgaattgcctag 458

                                                                       
Query: 300 gtttgatccctagcatttaaacacatgcttcccctatgcattccaaacccccaccctcag 359
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 457 gtttgatccctagcatttaaacacatgcttcccctatgcattccaaacccccaccctcag 398

                                                                       
Query: 360 tgttgtatgttctcaggtgagatagtgacactcaatatactctataacacacagaatcac 419
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 397 tgttgtatgttctcaggtgagatagtgacactcaatatactctataacacacagaatcac 338

                                                                       
Query: 420 acagagtcttgtttgtagaacatttacatacactatgtttttatatataaaaggagatgt 479
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 337 acagagtcttgtttgtagaacatttacatacactatgtttttatatataaaaggagatgt 278

                                                                       
Query: 480 ttgaattgtattcaaaagcttgatagggattataatagttttacttagtttcttttcatg 539
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 277 ttgaattgtattcaaaagcttgatagggattataatagttttacttagtttcttttcatg 218

                            
Query: 540 ctaccatctttaaagct 556
           |||||||||||||||||
Sbjct: 217 ctaccatctttaaagct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 556
Length of database: 957
Length adjustment: 10
Effective length of query: 546
Effective length of database: 947
Effective search space:   517062
Effective search space used:   517062
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)