BAC Information

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BAC

Clone NameMSMg01-428C22
Chromosome9 (Build37)
Map Location 12,811,224 - 12,811,426
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100039989, LOC622505, LOC100039680
Downstream geneLOC665285, LOC100039729, LOC100039758, Maml2, Mtmr2, Cep57, 2810485I05Rik, LOC665329
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428C22.T7 (MSMg01no428_c22.b1)MSMg01-428C22.TJ (MSMg01no428_c22.g1)
ACCAG521207AG521208
length817788
length of high quality
(start - end)
254 (70 - 323)480 (70 - 549)
definitionCHROMAT_FILE: MSMg01no428_c22.b1 PHD_FILE: MSMg01no428_c22.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:17 2005CHROMAT_FILE: MSMg01no428_c22.g1 PHD_FILE: MSMg01no428_c22.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:17 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
ATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAA
TTCTGATTGGATTGCCCAGTGAATAATTAATAATATAAATAAATAAATAA
CCATATAGTTTGAAAGCCAGTTTTCTGTTTTTGAATAATGTGAGAGTTTT
ACAAGAGGAAATTATTTCCTAGTAAAGAAGGTAGATGGATTTTTTAAATA
AAGGCACTTTACATGTAAAAATAGAAAGGGAGAAAGAAAGAAAGAAAGAC
AGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAGAAAG
AAAGAAAGAAAGAAAGAAAGAAAGATTTTTAAAGAAGGGAGGGAGGGAGG
GAGGGAGGAAGGAAGGGATGCCCCCCCCCCCCTCTTTTTGTCGTTCCCTT
TTTCTTTTTCCTTTTCCCTCTCTCTCCCCCGTCTTTCCTCTCTCTTTCTG
TCCTCGGCTTCTTTTTTCTTTCCCCTCTCCATTTTTTGCCCTTTTTTCCG
TTTTTCTTCTCTCTTTTCTTTTCTGTTCTTTGTTCTCCTTTTTTCTTCCT
CTTTTTTTCCCTCTTTTCCCTCCCTTCTTGCGTCCTTCTTTTCCCCCCTC
CTATATTCCTCTCCCATCCTCCTTTTTTATTTACATAATTTTTCAACAAC
ATTATATCTTTTCTTTTATTTCTTCCTTTCAACCCCCTTTTTCTCCCCCT
TTTTTCCCTTTCTCCCTCCCCTTTTTTTCTCCTTTACTTTCTCCTTTCTT
ATCTTTTCTTTCCCTTTTTACTTTTTCCCCTCCTTCCCATTTTCCTACTT
TTTTATCTTCTCCCTCT
TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXTCACCTGAGGAATACCGAATGGCAGAGAAGC
ACCTGAAAAAATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAA
ACAACCCTGAGATTCCACCTCACACCAGTCAGAATGGCTAAGATCAAAAA
TTCAGGTGACAGCAGATGCTGGCGTGTGTTGGGAGCCGCCCCCACATTCG
CCGTCACAAGATGGCGCTGACATCCTGTGTTCTAAGTGGTAAACAAATAA
TCTGCGCATGTACCAAGGGTATTTTACCACTACATGTACTCTGCCTTAAC
TCGGCCATGGGCTGCAGGCAATCAGGGAGTGATGCGTCCTAGGCGGAGAA
TAACTCTCCTAAATAGGGACGGGGGGTTTCGCTTTCGTTTAGAGGGGCGC
TTTCGTTTTTGGGGCTGGGGGCTTGCGCTCCTGGCTCCTGAAGATGTAAG
CAATAAAGTTTTGCCGCAGAAGATTCTGGTTTGTTGTGTCTTTCCTGGCC
GGTCGTGAGAACGAGTATAAGAGTTGGTGCTGAAATCCGGGACGATAAAA
TACTAGATAACTCGGGACCGGTGCAAGGAAGATTTCTCATTCCGGAACCA
AAACTGTGGGCCTCGGTTATTAAAGCTCCTATTAAAACCCGACTGTTGAA
TATGAATTCAACTTGCCCGGAATTTTTTATATTTTTCTCTCTGGGGGAAA
CAGGAGATTCCTAATTATTTATCGCCTTCTTTTTGCGN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_c22.b1 MSMg01no428_c22.b1 CHROMAT_FILE:
MSMg01no428_c22.b1 PHD_FILE: MSMg01no428_c22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:17 2005
         (254 letters)



>mm_chr9_12811024_12811677
          Length = 654

 Score =  362 bits (187), Expect = e-104
 Identities = 199/203 (98%)
 Strand = Plus / Plus

                                                                       
Query: 1   tgaataattaataatataaataaataaataaccatatagtttgaaagccagttttctgtt 60
           ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 201 tgaataattaataatataaataaataaataatcatatagtttgaaagccagttttctgtt 260

                                                                       
Query: 61  tttgaataatgtgagagttttacaagaggaaattatttcctagtaaagaaggtagatgga 120
           |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 261 tttgaataatgtgagagttttacaagaggaaattatttcctagtaaagaaagtagatgga 320

                                                                       
Query: 121 ttttttaaataaaggcactttacatgtaaaaatagaaagggagaaagaaagaaagaaaga 180
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 tttttgaaataaaggcactttacatgtaaaaatagaaagggagaaagaaagaaagaaaga 380

                                  
Query: 181 cagaaagaaagaaagaaagaaag 203
            ||||||||||||||||||||||
Sbjct: 381 aagaaagaaagaaagaaagaaag 403


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 86
Number of extensions: 44
Number of successful extensions: 44
Number of sequences better than 10.0: 1
Number of HSP's gapped: 44
Number of HSP's successfully gapped: 1
Length of query: 254
Length of database: 654
Length adjustment: 9
Effective length of query: 245
Effective length of database: 645
Effective search space:   158025
Effective search space used:   158025
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)