BAC Information

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BAC

Clone NameMSMg01-428F05
Chromosome9 (Build37)
Map Location 29,734,337 - 29,896,657
singlet/doubletdoublet
Overlap geneHnt
Upstream geneLOC625222
Downstream geneSnx19, LOC666478, Adamts15, Adamts8, Zbtb44, BC038156, St14
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-428F05.T7 (MSMg01no428_f05.b1)MSMg01-428F05.TJ (MSMg01no428_f05.g1)
ACCAG521317AG521318
length754787
length of high quality
(start - end)
229 (332 - 560)366 (81 - 446)
definitionCHROMAT_FILE: MSMg01no428_f05.b1 PHD_FILE: MSMg01no428_f05.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:28 2005CHROMAT_FILE: MSMg01no428_f05.g1 PHD_FILE: MSMg01no428_f05.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:50:28 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(29,896,429 - 29,896,657)(29,734,337 - 29,734,702)
sequence
NGGTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXC
GCGGAATTCAAATAATCACAGACATATGCACCTACCCTCCCCCGCATGCA
TGCATGACGACAAAGAAAATGAATGAAGGTTAATTCCTTCTCGGCCCTTT
CTCATGATGATTCATCCATAACGATTTCTACTGGTTGTATTTTCTTCTGT
GACAGCAACAATTTACTGTGTTCCGGCGAAGCCCATTTTCTCAGCATGAT
CTAGTTGTGTGGTGGTTTGGGAAGTAATTTACTGATAGTTTGCTTCAAAA
TTGCTTACAAAGACAAAGGTGTTTTTTTGACACCAAGGTGCATTTCTTAT
GGGCTGGAAAAATAGGATAAAACAATTTAAAAAGTAAAAACATAGTATTA
TCATCACGTTGAACTTGGGTTGTAAATCACACACCCCGAGGTGAGACTGG
CCTCTCCTCTTCATTCTGTGTCTTACTGGGGGTTAGGGGAAGCACCATGG
ATTGTCTGCTTGCATCAACGAATTCATAATGTGTCCTGTTGGAAGTACAT
TTCTGTTTCTGATCCTAAGCCTCCACCCCCATGATGCTCCACCCCTAGGA
TGCTGCTCTTCCTAGATTCACACTATGGAAGACAAGCAGCAGCTTGCAGA
ACCATGTCGGTTTCTTGTTTCTCTGCACGCTTCCCCCAATTCAAGTTTTT
TGGTTAAACGGATTTTGTTTCGTTTGTTCCGCTTATTCCTCGACGTTACC
CTTT
NCCGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXACATGGTGGGAGGGAGGGTT
GTTCTTTCATTCATTCATAAGTCCTGACAGTATGAAGCACCAATCCTATC
CGTATTTACAGGCATCACCGTGTTCTATAGTAGTAGGATGATGGAAACAA
TTCTCTACCCTCTTGGACTGAGTCGGAAGCATTAAACAATACAGCTAGAC
AAATACACTATACAATACACTTTCAGAAAGTAATAAGAAGGACCAGTGAA
AGACACGATAGAGAACTTTTTCCTCTAGCAATTCCTCTTCACTTGAAAAA
TTTTTACAAGATTCCACCATACAGGCACTCACAAGGGGACTACAAATCAA
ACATTTACTGCTAATAAACAATGAACAAATTTATTTTAAAACAATTCCTT
GGCACACATATAATTTTACCATTTAATGAAGATGAAAGCCGATTTGCATA
GTAATGAGATGGATTTGCTTGTTTACTTTTACACCAAGAATTAATTCTTG
CGCTGATATTTTATACTGGCNAACACACCGCTTCTTGCACATGTTTTACG
ATCGCCTTATTATTTTGTTTTTCCTAGGGTGAGTTATCTGACTAACGCTT
TTTTCCCCTGGAAATTAGTATGTTTAAGTAGATATTATAACTTTCTTCTA
TCTACTTTTCTTTCCTCCAAGCCCCACACTCAATTTCCCCTTCAACGATT
TTGCGTCCCGCCTTTCTTATTTTTCATTCTCCCCCCN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no428_f05.b1 MSMg01no428_f05.b1 CHROMAT_FILE:
MSMg01no428_f05.b1 PHD_FILE: MSMg01no428_f05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:28 2005
         (229 letters)



>mm_chr9_29896229_29896857
          Length = 629

 Score =  443 bits (229), Expect = e-129
 Identities = 229/229 (100%)
 Strand = Plus / Minus

                                                                       
Query: 1   accaaggtgcatttcttatgggctggaaaaataggataaaacaatttaaaaagtaaaaac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 429 accaaggtgcatttcttatgggctggaaaaataggataaaacaatttaaaaagtaaaaac 370

                                                                       
Query: 61  atagtattatcatcacgttgaacttgggttgtaaatcacacaccccgaggtgagactggc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 369 atagtattatcatcacgttgaacttgggttgtaaatcacacaccccgaggtgagactggc 310

                                                                       
Query: 121 ctctcctcttcattctgtgtcttactgggggttaggggaagcaccatggattgtctgctt 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ctctcctcttcattctgtgtcttactgggggttaggggaagcaccatggattgtctgctt 250

                                                            
Query: 181 gcatcaacgaattcataatgtgtcctgttggaagtacatttctgtttct 229
           |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 gcatcaacgaattcataatgtgtcctgttggaagtacatttctgtttct 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 229
Length of database: 629
Length adjustment: 9
Effective length of query: 220
Effective length of database: 620
Effective search space:   136400
Effective search space used:   136400
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
Query= MSMg01no428_f05.g1 MSMg01no428_f05.g1 CHROMAT_FILE:
MSMg01no428_f05.g1 PHD_FILE: MSMg01no428_f05.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:50:28 2005
         (366 letters)



>mm_chr9_29734137_29734902
          Length = 766

 Score =  685 bits (354), Expect = 0.0
 Identities = 363/366 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   acatggtgggagggagggttgttctttcattcattcataagtcctgacagtatgaagcac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 acatggtgggagggagggttgttctttcattcattcataagtcctgacagtatgaagcac 260

                                                                       
Query: 61  caatcctatccgtatttacaggcatcaccgtgttctatagtagtaggatgatggaaacaa 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 caatcctatccgtatttacaggcatcaccgtgttctatagtagtaggatgatggaaacaa 320

                                                                       
Query: 121 ttctctaccctcttggactgagtcggaagcattaaacaatacagctagacaaatacacta 180
           |||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||||
Sbjct: 321 ttctctaccctcttggactgagtcagaagcagtaaacaatacagctagacaaatacacta 380

                                                                       
Query: 181 tacaatacactttcagaaagtaataagaaggaccagtgaaagacacgatagagaactttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tacaatacactttcagaaagtaataagaaggaccagtgaaagacacgatagagaactttt 440

                                                                       
Query: 241 tcctctagcaattcctcttcacttgaaaaatttttacaagattccaccatacaggcactc 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tcctctagcaattcctcttcacttgaaaaatttttacaagattccaccatacaggcactc 500

                                                                       
Query: 301 acaaggggactacaaatcaaacatttactgctaataaacaatgaacaaatttattttaaa 360
           ||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 501 acaaggggactacaaatcaaacatttactgctaataaacaatgaagaaatttattttaaa 560

                 
Query: 361 acaatt 366
           ||||||
Sbjct: 561 acaatt 566


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 366
Length of database: 766
Length adjustment: 9
Effective length of query: 357
Effective length of database: 757
Effective search space:   270249
Effective search space used:   270249
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)