BAC Information

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BAC

Clone NameMSMg01-429E24
Chromosome9 (Build37)
Map Location 94,483,866 - 94,484,229
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC674371, LOC384967, EG384968, 1190002N15Rik, EG667601
Downstream geneSlc9a9, Chst2, LOC667088, 2610101N10Rik, LOC100040097, Paqr9
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429E24.T7 (MSMg01no429_e24.b1)MSMg01-429E24.TJ (MSMg01no429_e24.g1)
ACCAG522071AG522072
length735750
length of high quality
(start - end)
535 (61 - 595)364 (73 - 436)
definitionCHROMAT_FILE: MSMg01no429_e24.b1 PHD_FILE: MSMg01no429_e24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:45 2005CHROMAT_FILE: MSMg01no429_e24.g1 PHD_FILE: MSMg01no429_e24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:51:45 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAAAGCCCTAACCTAAACATAATAAAAGCAATTTACTGCAAACCAACAGC
CAATATCAAATTAAATGGAGACATCCTTGAAGCAATCCCACTGAAATCAA
GGACAAGACAAGGATGCCCACTCTCCCCATATCTGTTCAATGTAGTACTC
AAAGTGTTAGCTAGAACAATAAGACAACAACAACAACAACAACAACAAAA
GATCAGGGGGATAATAATTGGTAAAGAAAATATAAAGGTATCACTATTTG
CAGATTATATGATAGTATACATAAGCAACCCCAAAAATTCTACCAGAGAA
CTTCTCCAGGTGATAAGAAACTTTAGAAAAGTGGCTGGATATAAAATTAA
CTCGAATAAATCAGTAGCCTTTCTTTATACAATTGATAAACAGGCTGAGA
ATGAAAACAGCTCCCTTCACAGTAGCCAAAAATAATATAAAATATCTTGG
GGTAATGCTAGCCAAACAAGTGAAAGACCTGTATGATAATAACTTCAAGT
CTCTCAAGAAATTAATCAAAGAATATCTCAGAAAATGGAGAGATCTCCCA
TGCTCATGGATTGGCAGAATCAATATAATAAAAACAGCCATTCTACCAAA
GGGAATCTATAAATTCCATGCAATCCCCATTCAAATTCCCAAACAATTCC
TTCAGGGGCATGGAAAGGCCAATTCCTCAAATAAC
TGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXTTTGGATCAGCTGGCACAATAAGAACAT
GCTGTTCTACTGTGTTCAGGTTGAAATTTTCTAGAATGACTGCCAGTCCT
TCCTGGACCAGAGGGCTCAAGATGTTTTGAACTGGCTGTGCCCCTCTACC
CCAGTATATTTAGGATTAATCTCTAACCATATGTGACTTCCTTTGGAGAC
TGAGTTGTTTTGTCATTTTCCATCATGTGGGGGACACAGTGAGAGGGTCA
TCCTCTGCCGGATCCTATCTTATAGACCTTCTAGCCTTAGAACCATGATA
AAATAAGCCATGCTCTATGCTGTTTGGCCGTGGTGATATAAGCAGACTAA
AGTAACAGATGGATAAGCATTTCCTTGTCTTGGTTATCCAATGAAATGTA
AAAGGAAGGCTGCTTCCAGGGGTGCATTACCGGATATGTACNAAGGGTCG
GCATGTGCATTACTAGACTAAGCTTCTGACCACAGTTATACCCTAAATAG
TCCTTTTCTTTAATAGCACCGCCAACGGAAAGGCAATTTATTGCGTGGTT
CTTCCCGACCGCGCCCAACTTACAACTTCCCCTCCTCAGCCCCTGGAAAC
GGTTCACATGGCGCTGCTGTGTTGCCCCCTCTGTTGCCCCATCCCTCCTT
CCTCCCCCTGTGTCCCACTCATCCCTCCTCCCTATTCCCCCCCCCCGAAG

quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_e24.g1 MSMg01no429_e24.g1 CHROMAT_FILE:
MSMg01no429_e24.g1 PHD_FILE: MSMg01no429_e24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:51:45 2005
         (364 letters)



>mm_chr9_94483666_94484429
          Length = 764

 Score =  696 bits (360), Expect = 0.0
 Identities = 363/364 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tttggatcagctggcacaataagaacatgctgttctactgtgttcaggttgaaattttct 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 tttggatcagctggcacaataagaacatgctgttctactgtgttcaggttgaaattttct 505

                                                                       
Query: 61  agaatgactgccagtccttcctggaccagagggctcaagatgttttgaactggctgtgcc 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 agaatgactgccagtccttcctggaccagagggctcaagatgttttgaactggctgtgcc 445

                                                                       
Query: 121 cctctaccccagtatatttaggattaatctctaaccatatgtgacttcctttggagactg 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 444 cctctaccccagtatatttaggattaatctctaaccatatgtgacttcctttggagactg 385

                                                                       
Query: 181 agttgttttgtcattttccatcatgtgggggacacagtgagagggtcatcctctgccgga 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 agttgttttgtcattttccatcatgtgggggacacagtgagagggtcatcctctgccgga 325

                                                                       
Query: 241 tcctatcttatagaccttctagccttagaaccatgataaaataagccatgctctatgctg 300
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 324 tcctatcttagagaccttctagccttagaaccatgataaaataagccatgctctatgctg 265

                                                                       
Query: 301 tttggccgtggtgatataagcagactaaagtaacagatggataagcatttccttgtcttg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 264 tttggccgtggtgatataagcagactaaagtaacagatggataagcatttccttgtcttg 205

               
Query: 361 gtta 364
           ||||
Sbjct: 204 gtta 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 17
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 364
Length of database: 764
Length adjustment: 9
Effective length of query: 355
Effective length of database: 755
Effective search space:   268025
Effective search space used:   268025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)