Query= MSMg01no429_k02.b1 MSMg01no429_k02.b1 CHROMAT_FILE:
MSMg01no429_k02.b1 PHD_FILE: MSMg01no429_k02.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:10 2005
(536 letters)
>mm_chr9_28765402_28766332
Length = 931
Score = 839 bits (434), Expect = 0.0
Identities = 506/532 (95%), Gaps = 5/532 (0%)
Strand = Plus / Plus
Query: 5 gaattcagttattatcctttactgaagtattcatggagacaatgcaagatcccatgccta 64
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcagttatcatcctttactgaagtattcatggagacaatgcaagatcccatgccta 264
Query: 65 ctagggatgctcagtactgaaacagatatcacagagagagagccatattctgttatcacc 124
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 265 ctagggatgctcagtactgaaacagatatcacagagagatagccatattctgttatcacc 324
Query: 125 tattcctttagcctgtgatagagttagggcaagttctgagatccccaatcctactctcag 184
|| ||||||||||| | |||||||||||| ||||| || ||||||||||||||||||
Sbjct: 325 tactcctttagcct----t-gagttagggcaaattctgggacccccaatcctactctcag 379
Query: 185 tccccagattttcctcataggatcttatgttcttttctctaccacaacccaaagacaaat 244
|||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tccctagattttcctcatgggatcttatgttcttttctctaccacaacccaaagacaaat 439
Query: 245 gctccagtaagaagagccctataaggagagtagaaagtgataggatagctgttgtagagt 304
||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||
Sbjct: 440 cctccagtaagaagagccctataaggagagcataaagtgataggatagctgttgtagagt 499
Query: 305 tgaatacatactgtaaaagtctactattactttgaagatacacgagtgcacctgtacact 364
||||| ||||||||||||||||||||||||| ||||||||||| ||||||||||||||||
Sbjct: 500 tgaattcatactgtaaaagtctactattactgtgaagatacacaagtgcacctgtacact 559
Query: 365 caagttatgtggacaacatttcatggagatggagtttatgaccacaacaggacaaaacat 424
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 caagttatgtggacaacatatcatggagatggagtttatgaccacaacaggacaaaacat 619
Query: 425 aacttgcacatcctcctactcactggcaaactacagtttcaagcttccatgtcacttttg 484
|||||| |||||||||||||||||||||||||||| | |||||||| ||||||||| ||
Sbjct: 620 aacttgaacatcctcctactcactggcaaactacaaatgcaagcttctatgtcacttatg 679
Query: 485 agctaaacatgaaaccacaggaggcctgtaaaatatctggaaatgactgaca 536
||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 680 agctaaacatgaaaccacaggaggcctgtaaaatatctggaaatgactgaca 731
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 536
Length of database: 931
Length adjustment: 10
Effective length of query: 526
Effective length of database: 921
Effective search space: 484446
Effective search space used: 484446
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no429_k02.g1 MSMg01no429_k02.g1 CHROMAT_FILE:
MSMg01no429_k02.g1 PHD_FILE: MSMg01no429_k02.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:11 2005
(329 letters)
>mm_chr9_28962083_28962811
Length = 729
Score = 613 bits (317), Expect = e-180
Identities = 326/329 (99%)
Strand = Plus / Minus
Query: 1 ctaactccactccactccactccactctactccactccacttcactcaagatatagtagc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 576 ctaactccactccactccactccactctactccactccacttcactcaagatatagtagc 517
Query: 61 aagtggctatttgcatccctagtagtgcaaaccactgctggagatactgtgtatacagaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 516 aagtggctatttgcatccctagtagtgcaaaccactgctggagatactgtgtatacagaa 457
Query: 121 aagatatattctactctgtgcatcaccaagtagtctggcaggactcatcagaggtcgcct 180
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 456 aagatgtattctactctgtgcatcaccaagtagcctggcaggactcatcagaggtcgcct 397
Query: 181 ctctggaatatatctataaagctccaattttaggcccatcctctgcctttcatttctcca 240
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct: 396 ctctggaatatatctataaagctccaattttaagcccatcctctgcctttcatttctcca 337
Query: 241 aagaaagtgtgaactttgatggctctcctgcacagatcatgacaatccagagctgctaat 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 336 aagaaagtgtgaactttgatggctctcctgcacagatcatgacaatccagagctgctaat 277
Query: 301 tgaaggctggcctggtccactggccctag 329
|||||||||||||||||||||||||||||
Sbjct: 276 tgaaggctggcctggtccactggccctag 248
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 329
Length of database: 729
Length adjustment: 9
Effective length of query: 320
Effective length of database: 720
Effective search space: 230400
Effective search space used: 230400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
