BAC Information

Click to search

BAC

Clone NameMSMg01-429P14
Chromosome9 (Build37)
Map Location 106,347,125 - 106,347,433
singlet/doubletsinglet
Overlap geneAbhd14a
Upstream geneAtp2c1, EG434434, LOC664981, Pik3r4, E330026B02Rik, EG665033, 1110001D15Rik, LOC669311, 6230410P16Rik, Wdr82, Ppm1m, Twf2, Tlr9, Alas1, Wdr51a, Dusp7, Rpl29, Acy1
Downstream geneAbhd14b, Pcbp4, Parp3, Rrp9, Iqcf1, Iqcf5, Iqcf3, Iqcf4, LOC100041096, Grm2, Tex264, Rad54l2, LOC100041128, Vprbp, Armet, Dock3, Mapkapk3, Cish, Hemk1, 6430571L13Rik, Cacna2d2
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-429P14.T7 (MSMg01no429_p14.b1)MSMg01-429P14.TJ (MSMg01no429_p14.g1)
ACCAG522577AG522578
length804729
length of high quality
(start - end)
121 (62 - 182)308 (71 - 378)
definitionCHROMAT_FILE: MSMg01no429_p14.b1 PHD_FILE: MSMg01no429_p14.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:36 2005CHROMAT_FILE: MSMg01no429_p14.g1 PHD_FILE: MSMg01no429_p14.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:52:36 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TGCGGCCGCTAAACGACTCCTACATACACACATGCCGCGGAATCACTGTG
TTTCCACACAGAACTTGAACTCACAGAGACTCGCCTGCCTTTGCTTCCTG
AGTGCTGAGATTAAAAGTCTTCACCACCATGCTTGGCCCCATTTATATAT
ATATATAATGATGGTGGTGGTGGTGTGTGTGTANAANTCATTCTGTAGAT
CATCCTGGCTTTGTACTCAAGCCGGCCGCAGCCTTTTTCTGGATCCCGCC
TGCCACGACTAATGGTACTGCGCCACTACCCGCAGGCCAGAGCGCGAGTC
CTTTCCTCCATTTCGCGCCGGGTCCCCATTTCCAACTCCTGTCTCTTTTT
TTCTTTCCCCCCCTCCCCCGGGCGCGGCTGGTGTCTTTTTTCCATTTGTT
GCCATACTTCCCCCCCTCTCATATTCCCTCCCCTTCTTCGTTCCTGCTCC
CTCCTGTCTAGTCTCCCCTATTCTGCCCCTCCCTCTCCCTCTCCCCCCCC
TCGATACTCCCTCCTCCCATCCCCTATTTTCCCCCCCTCCCCTTTTTCCC
TCTTCCTCACTCCCGACCTCCCACCCCATAGCTCCATTTCCCGCTCTTTT
TCTATAAATGCCACCCCCCCCCCACATCCGGTGATTTTTTCCCCTCGTTC
TTTTTTTTGCCTTTCCCCCCGCTCCTTTTTTTTCTCCCTGCCCTCCCATC
CCTTTTCTTCTATCCCCACCTAACCTTTTAGTCCCTTTACCCCTCCCTCC
TCCTCCCCTCTATCTCAATATCACCCTCCCACCCCTTCCATCTCTTCACT
TCCG
TATTTTATTTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTCTGCTGCAGAGGCAGCCGAGGAACCGAGG
AACCGGGTCCCAGGGCTAGTTTCCAAAACACCAGATCGAGTGTTCTGGAA
GATACATTGTATTGGTGGGAGTTGGATGAACCTCAGACCCAGTGGCGGAT
GGAGTCATGAAGGCTGCTAAAGGTCAAAGTGCAGAGAGCTCCACTGAGGA
CGGGCCTGGAAATGATTGTCTTTCTTCACAATGAATAAACTGCTAAAACC
AGCAGTTCGTGGTTGCCCCTAGTGTCATGGGCCAGTTTGCAAAGAATGTT
GGGCATGATGTTGAGGTGTGAGATGGTGGGGGCTGCCAGGATCGTTCCTT
TTTCTTTTCCACCCCCCCCCCCCCTCTTTTCCTACTCTTTTCTCTTTCCC
CCCTCTCTTTTTTCCTTTTTCTCCCCCTTTTCCTCCCCCCCCCCCACCTC
TTTTCTCCCCCTTTTTCTTCCCTTTCTCTCGCCTTTCGCCCCCCCTCCTC
CCTTTCCNCCCTCTTTTTTCTCCTTTTTTTTTCCTTCCTTCACTTCTTCC
CTTCCTTCTTTCTTCTTCTCCCCCTCTCTTTTCCTCCTTCCTCCCCCTTA
TCTTTTTTTTTTCCTTCTTCTTTTTCTCCCTCCTTCCTTTTCTTTTTTTC
CCCTCTTTTTCTCTTTCCCCCCTCTTCTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no429_p14.g1 MSMg01no429_p14.g1 CHROMAT_FILE:
MSMg01no429_p14.g1 PHD_FILE: MSMg01no429_p14.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:52:36 2005
         (308 letters)



>mm_chr9_106346925_106347633
          Length = 709

 Score =  582 bits (301), Expect = e-171
 Identities = 307/309 (99%), Gaps = 1/309 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   tctgctgcagaggcagccgaggaaccgaggaaccgggtcccagggctagtttccaaaaca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctgctgcagaggcagccgaggaaccgaggaaccgggtcccagggctagtttccaaaaca 260

                                                                       
Query: 61  ccagatcgagtgttctggaaga-tacattgtattggtgggagttggatgaacctcagacc 119
           |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct: 261 ccagatcgagtgttctggaagaatacattgtattggtgggagttggatgaacctcagacc 320

                                                                       
Query: 120 cagtggcggatggagtcatgaaggctgctaaaggtcaaagtgcagagagctccactgagg 179
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 cagtggcggatggagtcatgaaggctgctaaaggtcaaagtgcagagagctccactgagg 380

                                                                       
Query: 180 acgggcctggaaatgattgtctttcttcacaatgaataaactgctaaaaccagcagttcg 239
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acgggcctggaaatgattgtctttcttcacaatgaataaactgctaaaaccagcagttcg 440

                                                                       
Query: 240 tggttgcccctagtgtcatgggccagtttgcaaagaatgttgggcatgatgttgaggtgt 299
           |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tggttgccccaagtgtcatgggccagtttgcaaagaatgttgggcatgatgttgaggtgt 500

                    
Query: 300 gagatggtg 308
           |||||||||
Sbjct: 501 gagatggtg 509


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 308
Length of database: 709
Length adjustment: 9
Effective length of query: 299
Effective length of database: 700
Effective search space:   209300
Effective search space used:   209300
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)