BAC Information

Click to search

BAC

Clone NameMSMg01-430E23
Chromosome9 (Build37)
Map Location 29,592,401 - 29,592,760
singlet/doubletsinglet
Overlap geneHnt
Upstream geneOpcml, LOC625222
Downstream geneSnx19, LOC666478
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-430E23.T7 (MSMg01no430_e23.b1)MSMg01-430E23.TJ (MSMg01no430_e23.g1)
ACCAG522834AG522835
length788794
length of high quality
(start - end)
360 (81 - 440)267 (84 - 350)
definitionCHROMAT_FILE: MSMg01no430_e23.b1 PHD_FILE: MSMg01no430_e23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:06 2005CHROMAT_FILE: MSMg01no430_e23.g1 PHD_FILE: MSMg01no430_e23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:53:06 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NTTAGGTTTTCAAAAATTGCGGGCGCAAAACGACTCACTATTGCCCACAG
ATCCGCGGAATTCCTTGACTTTTCCAAGAAGAAAAAAGCTCATCTCTTTG
ATTCACTAACTTTCTTATGCACGTACCACAAAGGACTGTACTTGCTGGAA
CTCTAAGTGTTTCAGGCTGCATACCTATGTTCCTTAAACATTAAGAAAGT
ATTTTATACAGATTCATTATAGTAGCGGTCTCATCAAAGCAGAGAGAGGA
GTGGGGGAAGGACTTCACTAAGGAAAAATCTAGGAACAAAACAAGTATTC
ACATAAAGAAATTAAATTCTGCCCCAAAGATGATTATCATCCTGACACCA
AAAATGAGATTTCATCTTTCTAATAACAAGCCTCACTTTATTGTAAGACC
TTTGTCCTGCACACATGCACACATGCATGGTTGGCATATATTCAATGTGT
GAAGGCTTGCATTTATGTCCCTAGGATTGATTCCGCTTGGACTGCTTCCA
GGGAAGCATGCATTTTTTGGTCCCCCCAACATCCAAAGTGTAGCCCTTAC
CCTCACATACCTCTCTTTATCATCCTGAAAATCTCCTTTTTTTTCCCTAT
TTCCTTACCTTTTTTTTTATACCCCCCGCCCATTGATATAATACTAATAT
CCCCCCCCCATAACCCTTTAATACCAATATTCTTCCGTCTCGTTTTTTTT
TCGGCTATATCCCTTTTCTCCCCTTATCCCCGTGCCCCTTTCCCTACATA
TATTTTCCCTTCTTTTTCCCTATACTCCCTTACCCTCC
NTTCCCTCGATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTGAGAGCAGAAGAAATA
GCCATCCCCAGGGAAGAGTCACCAATTGGTTCTCCAGGAACAATTGAAAA
GCTCTGAAATCAATCAAACACACACACACACACACACACACACACACACA
CACACACACGCAACATTTTAGAGTCTGGGCAGGTTGTATTTATATATCTA
GGAATACACATGTGTGTTACTACTAGAAGAACAGGGGCCATGAATTTTAA
AGAGACCAAGGATGGGGGAGGGAACATGAAAGGAGTAGGAGAGAGGAAGG
NNNTTNTTTTTTTTTNNTTTTTTTTTTTTTTTTTTTTTTNTTTTNTTTTT
TTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTTNTCCT
TTTTTNTTTTTTTTTTTTTTTNTNNNTTTTTTTTTTTTNTTGTTTTTTTT
TTTTNTTTTTNTTTTTTTGTTTNTTTTTTTTTTTNTTTTCCTTTTTGTTT
TTTTTTTTTGGTTTCTTTCGTTCTTCTCGTTTTTTCCCCCCCCTTTTGTT
TTGTCTTTTTTTGTTTAATTCGTCTCTTTCCCTCCTGACTCGTGTCCTCT
CCCTGCCTTCGCCCCTATGTACCGTTTCTCCTTTCCCCTCCTTTAGATCT
TTTATTGTACACCCCGCATCCTATCCCATCCTAGTTCCCTATTATCTATT
AATCCCAATATTACCTTTTCATCCATACTCATCGTCTATAAATT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no430_e23.b1 MSMg01no430_e23.b1 CHROMAT_FILE:
MSMg01no430_e23.b1 PHD_FILE: MSMg01no430_e23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:06 2005
         (360 letters)



>mm_chr9_29592201_29592960
          Length = 760

 Score =  673 bits (348), Expect = 0.0
 Identities = 357/360 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gaaaaaagctcatctctttgattcactaactttcttatgcacgtaccacaaaggactgta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 gaaaaaagctcatctctttgattcactaactttcttatgcacgtaccacaaaggactgta 501

                                                                       
Query: 61  cttgctggaactctaagtgtttcaggctgcatacctatgttccttaaacattaagaaagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 cttgctggaactctaagtgtttcaggctgcatacctatgttccttaaacattaagaaagt 441

                                                                       
Query: 121 attttatacagattcattatagtagcggtctcatcaaagcagagagaggagtgggggaag 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 attttatacagattcattatagtagcggtctcatcaaagcagagagaggagtgggggaag 381

                                                                       
Query: 181 gacttcactaaggaaaaatctaggaacaaaacaagtattcacataaagaaattaaattct 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 gacttcactaaggaaaaatctaggaacaaaacaagtattcacataaagaaattaaattct 321

                                                                       
Query: 241 gccccaaagatgattatcatcctgacaccaaaaatgagatttcatctttctaataacaag 300
           |||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 320 gccccaaagatgattagcatcctgacaccaacaatgagatttcatctttctaataacaag 261

                                                                       
Query: 301 cctcactttattgtaagacctttgtcctgcacacatgcacacatgcatggttggcatata 360
           |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 260 cctcactttattgtaagacctttgtcctgcgcacatgcacacatgcatggttggcatata 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 360
Length of database: 760
Length adjustment: 9
Effective length of query: 351
Effective length of database: 751
Effective search space:   263601
Effective search space used:   263601
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)