Query= MSMg01no430_n23.b1 MSMg01no430_n23.b1 CHROMAT_FILE:
MSMg01no430_n23.b1 PHD_FILE: MSMg01no430_n23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:57 2005
(411 letters)
>mm_chr9_38070671_38071481
Length = 811
Score = 592 bits (306), Expect = e-173
Identities = 360/396 (90%), Gaps = 31/396 (7%)
Strand = Plus / Plus
Query: 5 gaattcttatcttgaaaacttacatgacataatattggaagctgataatataaactttta 64
|||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||
Sbjct: 205 gaattcttatcttgaaaatttacatgacataatattggaagttgataatataaactttta 264
Query: 65 tattagcatcatacataaagccaactgcagatcatgttataatacttggtaagttgcctg 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 tattagcatcatacataaagccaactgcagatcatgttataatacttggtaagttgcctg 324
Query: 125 aaatacttcacatttcctgtatcggtgacccttctagccaatatccaactttagtcattt 184
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 aaatacttcacatttcctttatcggtgacccttctagccaatatccaactttagtcattt 384
Query: 185 tacataaatagtgtttcaatccctattagctctgggtatctagggatagacattctttta 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 tacataaatagtgtttcaatccctattagctctgggtatctagggatagacattctttta 444
Query: 245 aatcttactaacaatctatagcttctggagagatcatagtaagcataaaacatttataca 304
||||||||||||||||||||| ||||||||||||||||||||||| ||||||
Sbjct: 445 aatcttactaacaatctatag---------agatcatagtaagcataaaacatctataca 495
Query: 305 tacatatatatatatatgtatatatacatatacacacacacacacacacacacacacaca 364
||||||||||| ||||||||||||| |||||||||||| |||||||||||||||
Sbjct: 496 tacatatatat------gtatatatacata--cacacacacacatacacacacacacaca 547
Query: 365 cacacacacacccatatatatatatatatatatata 400
||||||||||||||||||||||
Sbjct: 548 --------------tatatatatatatatatatata 569
Score = 66.5 bits (34), Expect = 3e-15
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 378 atatatatatatatatatatatatatatatatat 411
||||||||||||||||||||||||||||||||||
Sbjct: 809 atatatatatatatatatatatatatatatatat 776
Score = 66.5 bits (34), Expect = 3e-15
Identities = 34/34 (100%)
Strand = Plus / Minus
Query: 378 atatatatatatatatatatatatatatatatat 411
||||||||||||||||||||||||||||||||||
Sbjct: 811 atatatatatatatatatatatatatatatatat 778
Score = 64.5 bits (33), Expect = 1e-14
Identities = 33/33 (100%)
Strand = Plus / Minus
Query: 378 atatatatatatatatatatatatatatatata 410
|||||||||||||||||||||||||||||||||
Sbjct: 807 atatatatatatatatatatatatatatatata 775
Score = 58.7 bits (30), Expect = 7e-13
Identities = 33/34 (97%)
Strand = Plus / Minus
Query: 378 atatatatatatatatatatatatatatatatat 411
||||||||||||||||||||||||||||| ||||
Sbjct: 803 atatatatatatatatatatatatatatacatat 770
Score = 54.9 bits (28), Expect = 1e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 383 tatatatatatatatatatatatatata 410
||||||||||||||||||||||||||||
Sbjct: 610 tatatatatatatatatatatatatata 583
Score = 54.9 bits (28), Expect = 1e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 381 tatatatatatatatatatatatatata 408
||||||||||||||||||||||||||||
Sbjct: 610 tatatatatatatatatatatatatata 583
Score = 54.9 bits (28), Expect = 1e-11
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 379 tatatatatatatatatatatatatata 406
||||||||||||||||||||||||||||
Sbjct: 610 tatatatatatatatatatatatatata 583
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 166
Number of extensions: 26
Number of successful extensions: 20
Number of sequences better than 10.0: 1
Number of HSP's gapped: 19
Number of HSP's successfully gapped: 8
Length of query: 411
Length of database: 811
Length adjustment: 9
Effective length of query: 402
Effective length of database: 802
Effective search space: 322404
Effective search space used: 322404
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no430_n23.g1 MSMg01no430_n23.g1 CHROMAT_FILE:
MSMg01no430_n23.g1 PHD_FILE: MSMg01no430_n23.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:53:57 2005
(307 letters)
>mm_chr9_38271152_38271857
Length = 706
Score = 571 bits (295), Expect = e-167
Identities = 304/307 (99%), Gaps = 1/307 (0%)
Strand = Plus / Minus
Query: 1 agtcaccaaggacacatttgcagaggccattttttttttctctaagagaatctgcagaca 60
||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 506 agtcaccaaagacacatttgcagaggcca-tttttttttctctaagagaatctgcagaca 448
Query: 61 caggaaaatgttctcattagaaaatgatctctcttcctatcctggttctttccccaccag 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 447 caggaaaatgttctcattagaaaatgatctctcttcctatcctggttctttccccaccag 388
Query: 121 tgaagtgtgggttgagtatgtgtgagattagccccacgtgagcatataaatcaaagtgta 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 387 tgaagtgtgggttgagtatgtgtgagattagccccacgtgagcatataaatcaaagtgta 328
Query: 181 caatccatcggcaaattatcttatacagagaaggacagtgataaaaatgtaagtaaaatt 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 327 caatccatcggcaaattatcttatacagagaaggacagtgataaaaatgtaagtaaaatt 268
Query: 241 tctagaaaggaagttgtgtaaaatgagatgaggaaagaagcagtttcttgcatttattta 300
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 267 tctagaaaggaagttgtgtgaaatgagatgaggaaagaagcagtttcttgcatttattta 208
Query: 301 ttctttc 307
|||||||
Sbjct: 207 ttctttc 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 307
Length of database: 706
Length adjustment: 9
Effective length of query: 298
Effective length of database: 697
Effective search space: 207706
Effective search space used: 207706
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
