XXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAGGATCCGCGGAATTCA
TTACCCTATGGCAAAATGAGCAAGGACAAGGTGGGTCCACATCCAAGGTC
TCAGTGTCAAGGTGGCAATGGTGGGGTATGATTGCCTGAAGCATGTCAGC
TTTTCCCAACCCCTTCCCTAAGAACAGTGAGTGTCCAAGAGTGAGTCTCT
TATGGACATTTTCCTGCGGATCCTCAGAGAGGAGGAAGGAAAGGACTAGA
TCTTAGTTGCCATTCTTTCCCCTTCCTGCCCTCCCACCATACCTAGGAAT
TCAGACGTTTAGGAAATTAGTTTGTTAACCAAATGGTGAAGTTAATGAAC
CCACTGATATCAAAAGAGAGACAAGTAATATCTTTATGTGTGTAATTAAT
TAGCCTATGTCTATGAAGTGTTCCGAGTCTGTGCCACAGATATCTTGTGG
TAATTATTATTACACAGGAAATACAGCTGGATTTCTTGACCCCTGTGCAC
TTAACAGCTCTCATTTAATGGTGCATTGATCATAGCTATATTTTATATGA
TCAGCGTTGATTCACTTTTAGCAATACCCCGAGATACTTTTTCCATGCCT
TTTAAGACTTTCCTTAAGAAAACCAAGGTTTAGACTTGTGTTTTGCAATG
TGAGTGGGACCCAAAAGCTTCTGAAAAAGTCTTGTGAGATGAAAGGGTAG
GTCCGCATGTAGAAAGGGTTCCCGAAAATGATTCTGTTATTGTCTA

XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXTTCTGGAATTCATGTGTATGTGTGAGTGTATATAAGTGTGTAT
GAATGTGTGTGTATGCATCCCCNCCCCCCCCCNNCCCCCCTCTTCCTCCC
CTCTCTTTTGCCTCCGCTGGTGTCTCTCTCCTCCCTTTCTTTTTCCTGCC
CCGCTTCGTCCCCTTTCTTTCCCGTCTCCCTCTCCTCTCCTCCCCGCCCT
TCGTCTTTTTTCTTCTCCCGCCCCCCTTTCTCCCCTCTTTGTTTCTTTTT
TTCCCCCCTCCCTCCTCCCCTCTTTTTTTTTTTTCCTTCTTCCCTCCTTC
CCCCTTCTTTTTCCCTCTTTTCCCCCTTCCTTCCTCCTCTCCTCCCTTTT
TTCCCCTTCCGCCTCCTTTTCCCCCCCCCCTCCCCTTTCTCTCCCCCTCC
TCCTCTCCTCTCCCCCTTTTTTTCCCCCTCCTCTTCTTCTCCTTCTCCCC
CTCCTTCTGCCCCTCCTTCACCCTCTCTCTTTTTCCCCTCTTTTCTCCCC
CTTCCCTTCCTTCCCTTTCCCCCTTCCTTTTTTTTTTCTCTTCCCCACTT
CTCCTCCCGTCCATCCCTCCTCCCTCTTTCTCTTTCCCCCCTCCCTCATC
CCTCCCCCCCTTATCTTTTTTCTCCTCCGCCCCTATCTGCTCTTTTTCTT
TCCCCTCTTATTTTTTCCCCCCCCCCCCTCTCCCCTTTTTCCCCCTCTTT
CCTCCCTTCTGCCTTTTCCCTTCTCTCTTTTTCTTTTCCCTCCCTTC

Query= MSMg01no431_a06.b1 MSMg01no431_a06.b1 CHROMAT_FILE:
MSMg01no431_a06.b1 PHD_FILE: MSMg01no431_a06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:09 2005
         (539 letters)



>mm_chr9_113194480_113195417
          Length = 938

 Score = 1007 bits (521), Expect = 0.0
 Identities = 530/533 (99%), Gaps = 1/533 (0%)
 Strand = Plus / Minus

                                                                       
Query: 7   gaattcattaccctatggcaaaatgagcaaggacaaggtgggtccacatccaaggtctca 66
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 738 gaattcattaccctatgg-aaaatgagcaaggacaaggtgggtccacatccaaggtctca 680

                                                                       
Query: 67  gtgtcaaggtggcaatggtggggtatgattgcctgaagcatgtcagcttttcccaacccc 126
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 679 gtgtcaaggtggcaatggtggggtatgattgcctgaagcatgtcagcttttcccaacccc 620

                                                                       
Query: 127 ttccctaagaacagtgagtgtccaagagtgagtctcttatggacattttcctgcggatcc 186
           ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 619 ttccccaagaacagtgagtgtccaagagtgagtctcttatggacattttcctgcggatcc 560

                                                                       
Query: 187 tcagagaggaggaaggaaaggactagatcttagttgccattctttccccttcctgccctc 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 tcagagaggaggaaggaaaggactagatcttagttgccattctttccccttcctgccctc 500

                                                                       
Query: 247 ccaccatacctaggaattcagacgtttaggaaattagtttgttaaccaaatggtgaagtt 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 ccaccatacctaggaattcagacgtttaggaaattagtttgttaaccaaatggtgaagtt 440

                                                                       
Query: 307 aatgaacccactgatatcaaaagagagacaagtaatatctttatgtgtgtaattaattag 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 aatgaacccactgatatcaaaagagagacaagtaatatctttatgtgtgtaattaattag 380

                                                                       
Query: 367 cctatgtctatgaagtgttccgagtctgtgccacagatatcttgtggtaattattattac 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 cctatgtctatgaagtgttccgagtctgtgccacagatatcttgtggtaattattattac 320

                                                                       
Query: 427 acaggaaatacagctggatttcttgacccctgtgcacttaacagctctcatttaatggtg 486
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 319 acaggaaatacagctggatttcttgacccctgtgcacttaacagctctcatttaatggcg 260

                                                                
Query: 487 cattgatcatagctatattttatatgatcagcgttgattcacttttagcaata 539
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 cattgatcatagctatattttatatgatcagcgttgattcacttttagcaata 207


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 539
Length of database: 938
Length adjustment: 10
Effective length of query: 529
Effective length of database: 928
Effective search space:   490912
Effective search space used:   490912
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)