Query= MSMg01no431_c15.b1 MSMg01no431_c15.b1 CHROMAT_FILE:
MSMg01no431_c15.b1 PHD_FILE: MSMg01no431_c15.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:21 2005
(541 letters)
>mm_chr9_24256989_24257925
Length = 937
Score = 959 bits (496), Expect = 0.0
Identities = 529/542 (97%), Gaps = 6/542 (1%)
Strand = Plus / Minus
Query: 1 aattacgtttaagtattcccgagaaagaatgagtagcttgtctttcagtggacacattct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 737 aattacgtttaagtattcccgagaaagaatgagtagcttgtctttcagtggacacattct 678
Query: 61 gagtttagccatgtattaccttgatacagagcaccaacatggagtagggcctgggggtca 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 677 gagtttagccatgtattaccttgatacagagcaccaacatggagtagggcctgggggtca 618
Query: 121 aagcctggagaaatccaaagttgttttggtctgagaacttcattcagtggtcttgtgagt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 617 aagcctggagaaatccaaagttgttttggtctgagaacttcattcagtggtctggtgagt 558
Query: 181 tttggagaacagtggggaaggctgctatgctagccctttgggcagtttgcctctgtaatg 240
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct: 557 tttggagaacagtggggaaggctgctat----gccctttgggcagtttgcctctgtaatg 502
Query: 241 ctctta-tatacattagagcctgtacagggcttcctgtctcctgtagtctcatcagtcag 299
|||||| | ||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ctcttagaagaca-gagagcctgtacagggcttcctgtctcctgtagtctcatcagtcag 443
Query: 300 acctttcgtaggtcaaatttgtggtggcttttatattgtgagctttttaaaagtccacaa 359
||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 442 acctttcataggtcaaatttgtggtggcttttatattgtgagcttttttaaagtccacaa 383
Query: 360 cctccactccagccttcccctaagtccttgcttaggataggtttcagtgttgcttcagca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 382 cctccactccagccttcccctaagtccttgcttaggataggtttcagtgttgcttcagca 323
Query: 420 actacagatgaggcacagctctgcactctgggctctgcactgagagaaagggctctgtgc 479
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 322 actgcagatgaggcacagctctgcactctgggctctgcactgagagaaagggctctgtgc 263
Query: 480 actctggaggaagtgctacagtgcaagcctcctgctcactcgcaggagtatttcccatcc 539
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 262 actctggaggaagtgctacagtgcaagcctcctgctcactcgcaggagtatttcccatcc 203
Query: 540 ac 541
||
Sbjct: 202 ac 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 541
Length of database: 937
Length adjustment: 10
Effective length of query: 531
Effective length of database: 927
Effective search space: 492237
Effective search space used: 492237
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no431_c15.g1 MSMg01no431_c15.g1 CHROMAT_FILE:
MSMg01no431_c15.g1 PHD_FILE: MSMg01no431_c15.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:54:21 2005
(474 letters)
>mm_chr9_24091695_24092567
Length = 873
Score = 886 bits (458), Expect = 0.0
Identities = 470/474 (99%), Gaps = 1/474 (0%)
Strand = Plus / Plus
Query: 1 tccaaccaggtgggagggttggaggctcttcatccatggggaacagaacggagatgctac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tccaaccaggtgggagggttggaggctcttcatccatggggaacagaacggagatgctac 260
Query: 61 tgatggggtaccaggagccgtcgtgctttggtgatgagcactgtgtaggaccagctaggt 120
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgttggggtaccaggagccgtcgtgctttggtgatgagcactgtgtaggaccagctaggt 320
Query: 121 gctctctgctctgcacatgggcagacctggcccatgggctcctaaccttctcatgtaccc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctctctgctctgcacatgggcagacctggcccatgggctcctaaccttctcatgtaccc 380
Query: 181 acagaaactgaaatttgactgggaaaacaaggaggaaatcaggtatcttttaagtgtgac 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acagaaactgaaatttgactgggaaaacaaggaggaaatcaggtatcttttaagtgtgac 440
Query: 241 aaaagctaattctagggaaaataaataatgcatttaaaaggcagcccatagaatccctac 300
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 aaaagctaaa-ctagggaaaataaataatgcatttaaaaggcagcccatagaatccctac 499
Query: 301 ctaaagaaggcaagttgaatgactgatgagaacctttgagtagatctacagaatttcatg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctaaagaaggcaagttgaatgactgatgagaacctttgagtagatctacagaatttcatg 559
Query: 361 ggagagccacaggaagtagagagcagtgggaatttcattaattgaccacacatgagtttg 420
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 ggagagccacagtaagtagagagcagtgggaatttcattaattgaccacacatgagtttg 619
Query: 421 tttgtactgttcttcaataaagtgacagtgtccttagctagcaactacagagag 474
||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 tttgtactgttcttcaataaagtgacagtgtccttagctagcaactacagagag 673
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 873
Length adjustment: 10
Effective length of query: 464
Effective length of database: 863
Effective search space: 400432
Effective search space used: 400432
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
