BAC Information

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BAC

Clone NameMSMg01-431L11
Chromosome9 (Build37)
Map Location 59,390,519 - 59,556,028
singlet/doubletdoublet
Overlap geneHexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2
Upstream geneCd276, Nptn, 2410076I21Rik, Hcn4, Neo1, LOC100040186, EG665330, Adpgk, Bbs4, Arih1, LOC621119, 4930425N13Rik
Downstream geneSenp8, Myo9a, EG665385, LOC100040361, Nr2e3, EG665389, Thsd4, LOC100039792, EG384942, Lrrc49
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-431L11.T7 (MSMg01no431_l11.b1)MSMg01-431L11.TJ (MSMg01no431_l11.g1)
ACCAG523910AG523911
length747760
length of high quality
(start - end)		532 (66 - 597)416 (69 - 484)
definitionCHROMAT_FILE: MSMg01no431_l11.b1 PHD_FILE: MSMg01no431_l11.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:09 2005CHROMAT_FILE: MSMg01no431_l11.g1 PHD_FILE: MSMg01no431_l11.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:09 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(59,555,497 - 59,556,028)(59,390,519 - 59,390,934)
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCAGG
TCNCTTCCACTGGACAGACAAGTACTGTGCTGACTGAGGCACCTTCCCAG
CCCCTCAAGGTCCCCTTGGTAGCCAGGTTATATCCCAACAATTCCCACCC
TTCCCAGTCTGGACTTATCTCTGATTGGGAAGGGGCCTCACCTGCCATCA
TCTGGAGGCTCCTGGACCTTTCCTGGTTTCTCCGTGCAGGGCACATGGCT
CTTCAGAGGTGCCATCTTCCCGTGCATTTGTTGGTTGCTAGAGGGAAATG
TGTCCATGTTATTTATAGAAATTTGGGGGCATCTTTCCCTATTAGCTGCA
CTGTGTCCAGGGCAGCTGCTCTGTTCTCTACCCTTTGATGTACAGGGTAG
TTTAAGATGTCATCATTTGGAGCCACCTTTCAAATGCTGTGCCCATTAAC
CCAGAGACCAGCATTCTGAGAGGGAACTCATTTCCCCACATCTAAACACT
ACTCTGGGTATAGTAGGCTTTTCTCACCTCTGCCAATCTGATAGGCAGAA
AAACATCATCTTCATTTGCATATCATCACTGATAGGTGCCTCCCACACCA
CACTGTCTAGAAACCTAAAGCTCGGGTAATGCCTGGTCCAGGGGGTAAAA
TTGTCAGCTGGCAACCTTTCAAGCAACTATCAACTGCTAGTCCCGTCCGA
ATGCAAACTCCTTGCCCCACCCATGAAGAATGAATATGAACTTGTTN

AGTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXCTTTTTTGGACTTGTCTGCTCAAGAGCAGGAA
GTGGGGGTGCTCAGCAGTCAGTAAGCAGCCCATTACTTTTGTAAAACTTG
GGGCAGAAATGGGGGAGCCTGCTTGTCAGGTGCACAGTGCTACCTCACCT
CTCCTACTGTTCACCTTTGATGTTACAGTACAGGAGCCAAGAACACATGT
GCATGGCTGTGTTCCATTGCCTGAGCCTGCAGGCCTAGATTGGTCAGATA
AGGAGTTTGATTCCATGTCCCTTTGAGTGTTGGAGCTGTCAGGCTGTTTG
CCATGTGTGTCAACACACAAAGTGGAAGAAGCCCTTGAAATTGGTTGTTA
CATTCTGAGGCACCCACTCCCAGGACTCCTCTGGGTAAGTGCCACATAAT
AGGGTTTGCTGTGGCAAAACTGACTTTGGAATGGTCAAGGAAATGACTGT
GTACTGACTGAGTGGCAGGCACTTAATATCTTGGATGTTTTGTCCACCTG
CTCTGTGTGTCAGTGTTATACCTGGCTGCACAATGAAACTTACAGCTTTC
TGATTGTTATTGTCTATTTGCTCCACGCTTTGTCATTTGGTTCTCTCTAT
AACTTGTTGTTCTCCAAATTACCCTCTGCTCTGGTCCCTCCTACAGGTTT
TATTTTAATTTTTCCCCCGTTCTTTTTATTTACCGCTCACTCTTTCCTTC
TCTCTATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no431_l11.b1 MSMg01no431_l11.b1 CHROMAT_FILE:
MSMg01no431_l11.b1 PHD_FILE: MSMg01no431_l11.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:09 2005
         (532 letters)



>mm_chr9_59555297_59556228
          Length = 932

 Score =  998 bits (516), Expect = 0.0
 Identities = 528/532 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   agacaagtactgtgctgactgaggcaccttcccagcccctcaaggtccccttggtagcca 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 732 agacaagtactgtgctgactgaggcaccttcccagcccctcaaggtccccttggtagcca 673

                                                                       
Query: 61  ggttatatcccaacaattcccacccttcccagtctggacttatctctgattgggaagggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 672 ggttatatcccaacaattcccacccttcccagtctggacttatctctgattgggaagggg 613

                                                                       
Query: 121 cctcacctgccatcatctggaggctcctggacctttcctggtttctccgtgcagggcaca 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 612 cctcacctgccatcatctggaggctcctggacctttcctggtttctccgtgcagggcaca 553

                                                                       
Query: 181 tggctcttcagaggtgccatcttcccgtgcatttgttggttgctagagggaaatgtgtcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 552 tggctcttcagaggtgccatcttcccgtgcatttgttggttgctagagggaaatgtgtcc 493

                                                                       
Query: 241 atgttatttatagaaatttgggggcatctttccctattagctgcactgtgtccagggcag 300
           ||||||   | |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 492 atgttagaaagagaaatttgggggcatctttccctattagctgcactgtgtccagggcag 433

                                                                       
Query: 301 ctgctctgttctctaccctttgatgtacagggtagtttaagatgtcatcatttggagcca 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 432 ctgctctgttctctaccctttgatgtacagggtagtttaagatgtcatcatttggagcca 373

                                                                       
Query: 361 cctttcaaatgctgtgcccattaacccagagaccagcattctgagagggaactcatttcc 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 372 cctttcaaatgctgtgcccattaacccagagaccagcattctgagagggaactcatttcc 313

                                                                       
Query: 421 ccacatctaaacactactctgggtatagtaggcttttctcacctctgccaatctgatagg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 312 ccacatctaaacactactctgggtatagtaggcttttctcacctctgccaatctgatagg 253

                                                               
Query: 481 cagaaaaacatcatcttcatttgcatatcatcactgataggtgcctcccaca 532
           ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 252 cagaaaaacatcatcttcatttgcatatcatcactgataggtgcctcccaca 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 532
Length of database: 932
Length adjustment: 10
Effective length of query: 522
Effective length of database: 922
Effective search space:   481284
Effective search space used:   481284
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no431_l11.g1 MSMg01no431_l11.g1 CHROMAT_FILE:
MSMg01no431_l11.g1 PHD_FILE: MSMg01no431_l11.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:09 2005
         (416 letters)



>mm_chr9_59390319_59391134
          Length = 816

 Score =  797 bits (412), Expect = 0.0
 Identities = 415/416 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   cttttttggacttgtctgctcaagagcaggaagtgggggtgctcagcagtcagtaagcag 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 cttttttggacttgtctgctcaagagcaggaagtgggggtgctcagcagtcagtaagcag 260

                                                                       
Query: 61  cccattacttttgtaaaacttggggcagaaatgggggagcctgcttgtcaggtgcacagt 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cccattacttttgtaaaacttggggcagaaatgggggagcctgcttgtcaggtgcacagt 320

                                                                       
Query: 121 gctacctcacctctcctactgttcacctttgatgttacagtacaggagccaagaacacat 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gctacctcacctctcctactgttcacctttgatgttacagtacaggagccaagaacacat 380

                                                                       
Query: 181 gtgcatggctgtgttccattgcctgagcctgcaggcctagattggtcagataaggagttt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gtgcatggctgtgttccattgcctgagcctgcaggcctagattggtcagataaggagttt 440

                                                                       
Query: 241 gattccatgtccctttgagtgttggagctgtcaggctgtttgccatgtgtgtcaacacac 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gattccatgtccctttgagtgttggagctgtcaggctgtttgccatgtgtgtcaacacac 500

                                                                       
Query: 301 aaagtggaagaagcccttgaaattggttgttacattctgaggcacccactcccaggactc 360
           ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 aaagtggaagaagcccttggaattggttgttacattctgaggcacccactcccaggactc 560

                                                                   
Query: 361 ctctgggtaagtgccacataatagggtttgctgtggcaaaactgactttggaatgg 416
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 ctctgggtaagtgccacataatagggtttgctgtggcaaaactgactttggaatgg 616


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 416
Length of database: 816
Length adjustment: 9
Effective length of query: 407
Effective length of database: 807
Effective search space:   328449
Effective search space used:   328449
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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