BAC Information

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BAC

Clone NameMSMg01-432A23
Chromosome9 (Build37)
Map Location 23,659,370 - 23,659,723
singlet/doubletsinglet
Overlap genenone
Upstream geneBbs9, Bmper, LOC100040866
Downstream geneLOC100040878, LOC100040893, Npsr1, Dpy19l1, Cypt4, Tbx20, LOC666251
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432A23.T7 (MSMg01no432_a23.b1)MSMg01-432A23.TJ (MSMg01no432_a23.g1)
ACCAG524171AG524172
length761860
length of high quality
(start - end)		474 (48 - 521)81 (76 - 156)
definitionCHROMAT_FILE: MSMg01no432_a23.b1 PHD_FILE: MSMg01no432_a23.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:38 2005CHROMAT_FILE: MSMg01no432_a23.g1 PHD_FILE: MSMg01no432_a23.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:38 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
NCCCTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGC
GGAATTCACCTTATTTTGTGGAAGCAAGAAAAGAGACTAGAATGCCATAG
GATAAAATGTTCTAACCATACCTACATTGGGAAAATAGAAATCGGGCTAC
TTAAACTTTCATATTCTAGACATTATTGTTTTCTAAATGCCATTTTCTTC
TTTGCAGAATGTAATGATAATGATGAAATAAGATGAAGTCTTGGGACATT
GTGACATTGAAATTGCCTGATTCAGCTACCTGACAAATATTTCAATATAT
TGAGCTTAGGAATGAATTCAGACAAATGACAATTAAACCTATAGTTACCT
ACATGAAATGGTACATGTGTGACTTCAGCAATCACAAAGCCTCCCAAGTC
AAATCTTTTTTTTTCTTTTTAAATATTTTAATTAGGTATTTTCCTCATTT
ACATTTCCAATGCTATACCAAAAGTCCCCCATACCCTCCCCCATCCCCTA
CTCACCCATTCCCACTTTTTGTGCCTGGTGTTCCCCTGTACTGAGGCATA
TAAAGGTTGCATGAACAATGGGGCTCTCTTTCCACTGATGGGTGAATAGG
GCATCTTCTGCTTACTATGCAGCTATAGACAGAAATCCCGGGAACGGGTA
AATCCTAATTGTGGTCCCCCCCAAAGGGTTGGGAACCTTTAATTCCTTGG
GGAATTTTCTAGGTCCCCCCTTTTGGGGCCCGGGGTGCCCCCCAAACTTT
ATTGGGGGCAC

CAATGCTANNGATAAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXCTTCTCAATGAGGTTTCCTTGATTG
AACAGCCAAGTGATACCTATTCCATTTTCTGCCCTAAGGAATCTGATATC
ATACATTCCCCTGCTCNCATGTCTCTGTGGGATTCCAGATCCCTTGNTCT
GNATCTNAANNAGGGTTTTTAGAATACAGTCCGGGTTTGTAGGGGCGTAG
GAGGTGGGGGTGAAGGGTGGTATGGGGCTTGTGGTGTTGGGGGGGATNAA
AATGGTCGAAAATTTTTTGAAGCCTTTGTTTTTTCCCCCGGTTTTCCAAA
AAAATTAAAAACCCCTTATTTCCCCCTGCCCTCCTAAAGTGGGAAAATAA
AAAAANNTTTTTGGGCCCCCCTCTCTTTTTNAAAAAAAATTTTTCTCTTT
TTTTACACAAGACACCCCCTCGGGGAAATTTTTTAATTTTTTTTTCTTTT
TTTAAAAAAACACAAAAAAAATAAAAAAATTTTTTTTTTTTTTTTTCACT
CCTCCNNGTAAAAAAATAATTCCCTNCCTCCCNTTTTTNCNNNANNTCCT
TTCTTTCCCCCCTACTCCCCTTCTTTTCCTTCCCTCTTCTTCCTTTATCC
TCCTCTTTTCTTTTCTCCTCTCCTCTTTCNCNNTTTNNNTTNCNCNTCCC
CTCCCTTTTTTTNCTTTCNNNCCNTTCNNNTCCNCCCCCCNCTCCCCCTC
CCCCCCCCCCTTTNTTCCCCTTNTTTTCCCCTTCTCCNCTTTTCTTCCCT
TCTCNNNNTCACTTTCCCTCCTTTNCTTTTTTTCTTTTTTTTTTTTCTTT
GAGAGTTGTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_a23.b1 MSMg01no432_a23.b1 CHROMAT_FILE:
MSMg01no432_a23.b1 PHD_FILE: MSMg01no432_a23.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:38 2005
         (474 letters)



>mm_chr9_23659162_23660036
          Length = 875

 Score =  538 bits (278), Expect = e-157
 Identities = 335/354 (94%), Gaps = 1/354 (0%)
 Strand = Plus / Minus

                                                                       
Query: 9   tcaccttattttgtggaagcaagaaaagagactagaatgccataggataaaatgttctaa 68
           ||||||||||||||||||||||||||||||| | ||||||  ||||||||||||||||||
Sbjct: 562 tcaccttattttgtggaagcaagaaaagagatttgaatgctgtaggataaaatgttctaa 503

                                                                       
Query: 69  ccatacctacattgggaaaatagaaatcgggctacttaaactttcatattctagacatta 128
           ||| || |||||||||||||||| |||||||||||||||||||||||||||| |||||| 
Sbjct: 502 ccaaacatacattgggaaaataggaatcgggctacttaaactttcatattctggacattt 443

                                                                       
Query: 129 ttgttttctaaatgcca-ttttcttctttgcagaatgtaatgataatgatgaaataagat 187
           ||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||
Sbjct: 442 ttgttttctaaatgccatttttcttctttgcagaatgtaatgataatgataaaataagat 383

                                                                       
Query: 188 gaagtcttgggacattgtgacattgaaattgcctgattcagctacctgacaaatatttca 247
           ||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct: 382 gaagtcttgggactttgtgactttgaaattgcctgattcagctacctgacaaatatttca 323

                                                                       
Query: 248 atatattgagcttaggaatgaattcagacaaatgacaattaaacctatagttacctacat 307
           ||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||
Sbjct: 322 atatattgagcttagaaatgacttcagacaaatgacaattaaacctatagttacgtacat 263

                                                                 
Query: 308 gaaatggtacatgtgtgacttcagcaatcacaaagcctcccaagtcaaatcttt 361
           ||||||| | |||||||||||||||||||||| |||||||||||||||||||||
Sbjct: 262 gaaatggcatatgtgtgacttcagcaatcacacagcctcccaagtcaaatcttt 209


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 875
Length adjustment: 10
Effective length of query: 464
Effective length of database: 865
Effective search space:   401360
Effective search space used:   401360
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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