BAC Information

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BAC

Clone NameMSMg01-432D04
Chromosome9 (Build37)
Map Location 61,890,568 - 61,891,054
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100040481, Tle3, LOC100039851, Rplp1, Kif23, Paqr5
Downstream geneGlce, Spesp1, LOC100039897, Anp32a, Coro2b, Itga11, EG665478, Fem1b, Cln6, Calml4, Pias1, LOC100039976
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-432D04.T7 (MSMg01no432_d04.b1)MSMg01-432D04.TJ (MSMg01no432_d04.g1)
ACCAG524275AG524276
length780766
length of high quality
(start - end)
534 (39 - 572)474 (68 - 541)
definitionCHROMAT_FILE: MSMg01no432_d04.b1 PHD_FILE: MSMg01no432_d04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:50 2005CHROMAT_FILE: MSMg01no432_d04.g1 PHD_FILE: MSMg01no432_d04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:55:50 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXGAATCCGCGGAATTCTCAA
CTGAGATATCCCGAATGGCTGAGAAGCACCTGAAAAACTGTTCAACATCC
TTAATCATCAGGGAAATGCAAATTAACAACCCTGAGATTCCACCTTACAC
CAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGA
GGATGTGGAGAAAGAGGAACACTTCTCCATTGCTGGTGGGATTGCAAGCT
TATACAACCACTCTGGAAGTCAGTCTGGAGGTTTCTCAGAAAATTGGACA
TAGTACTACCGGAAGATCCAGTAATACCTCTCCTGGGCATACACCCAGAA
GATGTTCCAACTGGTAATAAGGACACATGCTCCACTATGTTCATAGTAGC
CCTATTTATAATAGCCTGAAGCTGGAAAAAACCCAGATGTCCCTCAACAG
AGGAATAGATACAGAAAATGTGATACATTTACACAATGGAGTACTACTCA
GCTATTAAAAACAATGACTTTATGAATTTCTTGGGCAAATGGAGGTATCC
GGAGGATATCATCCTGAGTGAGGGAACCCAATCACAAAAGAAGTCACTAG
ATATGCACTCACTGATAAGTGATATCAGCCCAGAAACTTAGAATACCCCA
GATACAACTTGTCCAACTTTGAAAATCCCGAATGAGGATCCACGGGTGGA
TACTTCTTTCCTCCTTAAAAAAGGAACCACATTCCCCTGATTGGTATTCC
GAGAACTCAGTTTTTACTTTTGATCAAAAG
AGTGAGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXAGTTTTCTCCTTACACCACGTGAGTTTCAAGGG
TCCAGCTCAGGTCCTCCGTCCTGGCTAGAAGTACTTCTTTCTGCTGAGCC
ACCAGCTCAAATGTGTATCTTTTGGTCAACATCAGCCCATCTACCTAGCC
CTTGGCAACCACCCTGCTAATTTCAACATCTACATTCGAAAGCAACTTTC
TTAGATCACACAGATGAGGGAGCTCAGGTGGCAGCTACCTTTTGTTGCTC
TGATTTCTTTCATGTGGCATAATGACCTCCTGGGCCACTTAAGTTTCAAC
ACTGTTGCCACTGGATAAACAGTGGAATTTTATCCTGTTTGGTTCTTTTT
AATGGTTAAATAAAATGGTGTACATGGATTGTGTCTTTTTAAAATATTGA
TTGATTGATTGATTTTTGAGACAGGCATTTCAAAGAGCTCAAGACGGCCC
TGAACTTCTTAGGCCTTCTATCTCATTTCCTCAATCCTAGGATTATAGGG
CTGCATCCATGCTGGTTTGCGCTGATCTGGAGGGGAATCGGGGCTTTGTG
ACGCTTGGCACACCCTCCTAGTACTTGATGGTCTTCCACTTGAAATGTTA
CTTTTATCTTCTTCCGATGATGGAACCATATTGTCGGTCCATTTTTTGTG
TTTTAACATCCACGACGCAATACACTATTATAATTTTCTTTTCTCTGTCA
TTTTAAAAAATATTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no432_d04.g1 MSMg01no432_d04.g1 CHROMAT_FILE:
MSMg01no432_d04.g1 PHD_FILE: MSMg01no432_d04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:55:50 2005
         (474 letters)



>mm_chr9_61890373_61891246
          Length = 874

 Score =  822 bits (425), Expect = 0.0
 Identities = 466/487 (95%), Gaps = 13/487 (2%)
 Strand = Plus / Plus

                                                                       
Query: 1   agttttctccttacaccacgtgagtttcaagggtccagctcaggtcctccgtcctggcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 agttttctccttacaccacgtgagtttcaagggtccagctcaggtcctccgtcctggcta 255

                                                                       
Query: 61  gaagtacttctttctgctgagc-----caccagctcaaatgtgtatcttttggtcaacat 115
           ||||||||||||||||||||||     ||||||| |||||||||||||||||||||||||
Sbjct: 256 gaagtacttctttctgctgagccatctcaccagcccaaatgtgtatcttttggtcaacat 315

                                                                       
Query: 116 cagcccatctacctagcccttggcaaccaccctgctaatttcaacatctacattcgaaag 175
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 316 cagcccatctacctagcccttggcaaccaccctgctaatttcaacatctacattcgaaag 375

                                                                       
Query: 176 caactttcttagatcacacagatgagggagctcaggtggcagctaccttttgttgctctg 235
           ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 376 caactttcttagatcacacagatgagggagctcaggtggtagctaccttttgttgctctg 435

                                                                       
Query: 236 atttctttcatgtggcataatgacctcctgggccacttaagtttcaacactgttgccact 295
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 436 atttctttcatgtggcataatgacctcctgggccacttaagcttcaacactgttgccact 495

                                                                       
Query: 296 ggataaacagtggaattttatcctgtttggttctttttaatggttaaataaaatggtgta 355
           |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 496 ggataaacagtggaattttatcctgtttggttctttgtaatggttaaataaaatggtgta 555

                                                                       
Query: 356 catggattgtgtctttttaaaatattga--------ttgattgattgatttttgagacag 407
           ||||||||||||||||||||||||||||        ||||||||||||||||||||||||
Sbjct: 556 catggattgtgtctttttaaaatattgactgattgattgattgattgatttttgagacag 615

                                                                       
Query: 408 gcatttcaaagagctcaagacggccctgaacttcttaggccttctatctcatttcctcaa 467
           |||||||||||||| ||| || ||| ||||||||||||||||||||||||||||||||||
Sbjct: 616 gcatttcaaagagcccaaaacagccttgaacttcttaggccttctatctcatttcctcaa 675

                  
Query: 468 tcctagg 474
           |||||||
Sbjct: 676 tcctagg 682


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 474
Length of database: 874
Length adjustment: 10
Effective length of query: 464
Effective length of database: 864
Effective search space:   400896
Effective search space used:   400896
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)