Query= MSMg01no433_c01.b1 MSMg01no433_c01.b1 CHROMAT_FILE:
MSMg01no433_c01.b1 PHD_FILE: MSMg01no433_c01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:08 2005
(650 letters)
>mm_chr9_29248079_29249128
Length = 1050
Score = 992 bits (513), Expect = 0.0
Identities = 552/565 (97%), Gaps = 4/565 (0%)
Strand = Plus / Minus
Query: 9 gaattcagaaaa-atggactcggttttttgagttccagtcaggtactcggtgtctttggc 67
|||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 563 gaattcagaaaaca-ggactcggttttttgagttccagtcaggtactcggtgtctttggc 505
Query: 68 tgaagttcagtgtctgaaatattaaagcagaaggtgttaaggagaaaatgacaagctact 127
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 504 tgaagttcagtgtctgaaatattaaagcagaaggtgttaaggagaaaatgacaagctact 445
Query: 128 gtcccaaaggggcctatgtctccagctcttatcataggttcttggttaggatattctcaa 187
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 444 gtcccaaaggggcctatgtctccagctcttatcacaggttcttggttaggatattctcaa 385
Query: 188 ggtcgactcaccagcaaagcaaagcagtatgtcttttctgtgcatgaaatgacctactat 247
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 384 ggtcgcctcaccagcaaagcaaagcagtatgtcttttctgtgcatgaaatgacctactat 325
Query: 248 cctcatcttgatggcagaatggaaggggcctctagtccacaagtaactgtctctttgtaa 307
||||||||||||| |||||||||||||||||| || ||||||||||||||||||||||||
Sbjct: 324 cctcatcttgatgacagaatggaaggggcctccagcccacaagtaactgtctctttgtaa 265
Query: 308 gc-aaagtagtgaccacatggtagctgcagatagaaattgttatctacaaatgacttgct 366
| ||| ||||| ||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct: 264 acgaaa-tagtggccacagggtagctacagatagaaattgttatctacaaatgacttgct 206
Query: 367 cattagatgcaggagctattttaaactcttagtggcaattagttcacttcatctttacag 426
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 cattagatgcaggagctattttaaactcttagtggcaattagttcacttcatctttacag 146
Query: 427 caatcccagaaactatcgatgctcctgtttaatacagataggggaactgaaatgtttgac 486
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 145 caatcccagaaactatcgatgctcctgtttaatacagataggggaactgaaatgtttgac 86
Query: 487 atgtttagtcctcacggcatctcatcgcttgaaaattgcgaagccaagattggtggctct 546
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 85 atgtttagtcctcacggcatctcatcgcttgaaaattgcgaagccaagattggtggctct 26
Query: 547 ggaaccagggtgctgaacttccagc 571
|||||||||||||||||||||||||
Sbjct: 25 ggaaccagggtgctgaacttccagc 1
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 650
Length of database: 1050
Length adjustment: 10
Effective length of query: 640
Effective length of database: 1040
Effective search space: 665600
Effective search space used: 665600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no433_c01.g1 MSMg01no433_c01.g1 CHROMAT_FILE:
MSMg01no433_c01.g1 PHD_FILE: MSMg01no433_c01.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:08 2005
(495 letters)
>mm_chr9_29124183_29125077
Length = 895
Score = 946 bits (489), Expect = 0.0
Identities = 492/493 (99%)
Strand = Plus / Plus
Query: 1 tctccctcaggaactaacaaagggctgatatcagatatgtacctggtttttgagacaaag 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 tctccctcaggaactaacaaagggctgatatcagatatgtacctggtttttgagacaaag 260
Query: 61 ctattgctcagcccacaacctagaattttcaagaaaaaatgtagtgaaaacaggtgggac 120
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 ctattgttcagcccacaacctagaattttcaagaaaaaatgtagtgaaaacaggtgggac 320
Query: 121 taccccaggttatgcccaatggagggtcagctccaccccagcccccactgccaccccaga 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 taccccaggttatgcccaatggagggtcagctccaccccagcccccactgccaccccaga 380
Query: 181 tttgcttgatgatatctctgaggctgagtgggtctcagcctcgcccactggactcacagc 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 tttgcttgatgatatctctgaggctgagtgggtctcagcctcgcccactggactcacagc 440
Query: 241 tgaactcgccaagctgcctgggattttgctctccttgacgccctaaaagagatttgatca 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 tgaactcgccaagctgcctgggattttgctctccttgacgccctaaaagagatttgatca 500
Query: 301 ggccaggtggaaagacaaagctacgtgtgagaaatcaccatcatgcagaacgggcaggaa 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 ggccaggtggaaagacaaagctacgtgtgagaaatcaccatcatgcagaacgggcaggaa 560
Query: 361 gagaggaggagaggaagaagagaaatcaagcatgaaaaagaaaagggaaatatagccaga 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 gagaggaggagaggaagaagagaaatcaagcatgaaaaagaaaagggaaatatagccaga 620
Query: 421 gacacagaaagcctgtcacatctctccacgctgcaacaaaagcaagggagagatagtttc 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 gacacagaaagcctgtcacatctctccacgctgcaacaaaagcaagggagagatagtttc 680
Query: 481 tctttaatgaatg 493
|||||||||||||
Sbjct: 681 tctttaatgaatg 693
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 495
Length of database: 895
Length adjustment: 10
Effective length of query: 485
Effective length of database: 885
Effective search space: 429225
Effective search space used: 429225
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
