BAC Information

Click to search

BAC

Clone NameMSMg01-433G06
Chromosome9 (Build37)
Map Location 6,951,779 - 6,951,997
singlet/doubletsinglet
Overlap geneDync2h1
Upstream geneLOC100039372, LOC664957, LOC676037, Pdgfd, Ddi1, EG664919, LOC100039400, LOC100039418, EG547034
Downstream geneLOC100039658, Dcun1d5, Mmp13, Mmp12, Mmp1b, Mmp3, Mmp1a, Mmp10, Mmp8, Mmp27, Mmp20, Mmp7, LOC665057, LOC100039782, Tmem123, Birc2, Birc3, Yap1
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-433G06.T7 (MSMg01no433_g06.b1)MSMg01-433G06.TJ (MSMg01no433_g06.g1)
ACCAG525184AG525185
length767808
length of high quality
(start - end)
219 (71 - 289)242 (71 - 312)
definitionCHROMAT_FILE: MSMg01no433_g06.b1 PHD_FILE: MSMg01no433_g06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:28 2005CHROMAT_FILE: MSMg01no433_g06.g1 PHD_FILE: MSMg01no433_g06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:57:28 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
CCCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCAACAGAATCCGCGGA
ATTCTCATTGTATCCAACTGAATGGCTGAGAAGCACATGAAAAAATGTTC
AGTATCCTTAATCATCAGGAAAATAAATGCAAATAAAAATAACCTTGAGA
TTCCACCTCACACTACTCAGAATGGCTAAGATAAAAAATTCAGGTGACAG
CAGATGCTGGGAAGGATGTGGAGAAAGATGAACACTCCTCCACTGTTGGT
GTGATTGCAAGCTTTTACAACCACTCTGGAAGACAGTTTGTAGGTTCCTC
AAAAAATTCCACATAATTTTTATTTTAAGATCCAGAAATATTTCTCCTGG
GCATATACCTAGAATAAGTTCCAATTGGTAATAACAATATATGCCCCACT
ATGTTCATAGAATCCTCATTTTTAACATTTTTATTTTGTTCCCATCCCTC
ATGTTTTTTTCCCCATACCGCCTTTTTTTCTTGGCCCCTTTTTCCCCCCC
GGACTACTTTTTCCCTTTTTTTTATTTATGCCTTTTCCCCCCTCCTTTTT
TCCCCCTTCCTCTCCTTTTTTTCCTCCCCCTCTTTTTTTTTCCCATTTTC
TTTTCCTTTCCCTTTTTTTTTTTTTTCCTCTCTTTCTTTTATTTTTNCCC
ACAATTCCTTTCCCCCCCCCTCTTATTTCTCTTCTCTTCTTTTTTTTTCT
CTCTCCCCTACTTTTTTCTTCCCCCCTCCTTTCCTTTCCCTTTTTTTTTC
TTCCCCTTTTTTTCCTT
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXTATTTAATTCCATGTCCTGTGTTTAATTGG
GTTGCTCATTGTCCTATGTTTAGTTTTTTGAGTTCACTGTATATTCTAGA
CAATGACCCTCTGCCTGGTATATTCTGCCTATTCCTTCAAATGATGGTGC
CACTTGCTTTATGGAACGTTCTTGTTTCTTGAGGTCTCACTTACTTTTGG
TCTCAATGCCTACCTAGTCTTTGTGACCTGTTCCGAAAAATCCCGTGCTT
TCCTCTGTCATATTTAGGGATTCCGGTTTTATCTTGAGTCCCTTGATCCT
CTTGTACCCCATTGACTCCATCCTTCTACGTCCATACCTACTTCCTTATC
CCCTATGCGCTGTCTCGTACCTCCTCTACCCTCTCTCTCCTTCTCTACTC
CCCTCCTTCCTCACCTTTCTCTTTCTCCTACTCTCTTCCCCTTTTCTTCC
TTTCCCCCTCCCTTACCCCTCCTTCCTTCTCTCTTTTTCCCCTCCTCTTT
TTTTCTCTTCTCCCCCTCTCTACCTCTCTTTCCCTTTCCCTCTCCTCGTT
TCCCCCCTTTTCCCCTTCTTCCTTTCCTTTTCTTCCTCTCTTCAATTCCC
CTCATTCCCTTCTTATCTCTTTTTCCCCCTCCCCCTTTTTCCTTCCCTTC
TCTCCTCCCCCCTTTTTTCCCCTTTCCCTTTTTCTCCTTCCTTTTCCTCC
CTTTTCCCATTTCCTCTTCCACTTTCCCTCTCTTTTTCCCTTTTAACCTT
TTCCTCAG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no433_g06.g1 MSMg01no433_g06.g1 CHROMAT_FILE:
MSMg01no433_g06.g1 PHD_FILE: MSMg01no433_g06.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:57:28 2005
         (242 letters)



>mm_chr9_6951476_6952113
          Length = 638

 Score =  373 bits (193), Expect = e-108
 Identities = 214/223 (95%), Gaps = 4/223 (1%)
 Strand = Plus / Minus

                                                                       
Query: 1   tatttaattccatgtcctgtgtttaattgggttgctcattgtcctatgtttagttttttg 60
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 522 tatttaattccatgtcctatgtttaattgggttgctcattgtcctatgtttagttttttg 463

                                                                       
Query: 61  agttcactgtatattctagacaatgaccctctgcctggtatattctgcctattccttcaa 120
           ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 462 agttcactgtatattatagacaatgaccctctgcctggtatattctgcctattccttcaa 403

                                                                       
Query: 121 atgatggtgccacttgctttatggaacgttcttgtttcttgaggtctcacttacttttgg 180
           |||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||
Sbjct: 402 atgatggtgccacttgctttatggaacgtttttgtttcttgaggtctcacttatttttgg 343

                                                      
Query: 181 tctcaatgcctacctagtctttgtgacctgttccgaaaaatcc 223
           ||||||||||||    ||||||||||||||||| |||||||||
Sbjct: 342 tctcaatgccta----gtctttgtgacctgttcagaaaaatcc 304


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 242
Length of database: 638
Length adjustment: 9
Effective length of query: 233
Effective length of database: 629
Effective search space:   146557
Effective search space used:   146557
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)