BAC Information

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BAC

Clone NameMSMg01-434D20
Chromosome9 (Build37)
Map Location 80,828,331 - 80,828,649
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC666490, Senp6, LOC100041249, Myo6, Impg1
Downstream geneEG666534, LOC100039038, Htr1b, LOC671392, 4930486G11Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-434D20.T7 (MSMg01no434_d20.b1)MSMg01-434D20.TJ (MSMg01no434_d20.g1)
ACCAG525833AG525834
length723760
length of high quality
(start - end)
429 (62 - 490)319 (73 - 391)
definitionCHROMAT_FILE: MSMg01no434_d20.b1 PHD_FILE: MSMg01no434_d20.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:35 2005CHROMAT_FILE: MSMg01no434_d20.g1 PHD_FILE: MSMg01no434_d20.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 18:58:35 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCTCA
CCTGATGCCCACCGAATGGCAGAGAAGCACCTGAAAAAATGTTCAACATC
CTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGAAATTCCACCTCA
CACCAGTCAGAATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGG
CATGGATGTGGAGAAAGAGGAACACTCCTCCATTGTTGGTGGGATTGCAG
GCTTGTACAACCACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAATTGG
ACATAGTACTACCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCA
GAAGATTCCCCAACTGGTAAGAAGGACACATGCTCCACTATGTTCATAGC
AGCCTTATTTATAATAGCCAGAAGCTGGAAAGAACCCAGATGCCCCTCAA
CAGAGAATGGATACAGAAAATGTGGTACATCTACACAATGGAGTACTACT
CAGCTATTAAAAAGAATGAATTTATGAAATTTCTAGCCAAATGGATGGAC
CTGGAAGGCATCATCGTGAGTGAGTTAACCCTTCCCAAAGGAACTCCACC
ATATGTACTCACTGATAAGTGCATTATAGCCCCAAACCTAAGAAACCCCG
GAATTAAGAAACCATTTCCCTAACCCTTGAACTCTCAAAAAAATGAAAAC
TGGAATGTGGAACCTAGGCCCCC
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXCTTAGGAGCAGGCAGCAGAAATCTGAGA
CTCACAGAAAATGGAATTAAGCAAATGTTCTATTTATAAACAGAATGATA
ATACAGGAGTGAGTGCTGGAAAGAACTTAAACACATCCCAAAATGAGTGG
AATGTAAGCATTGGGCCTGGAGGAAGATGTTGGTGATCACAGAAAGACAG
AAGGTAGACTGGAAGGACACTTTAGGGAAACTTCAATTCAATGTTGGATT
GGTATAAGAGTTTTCATTTGTCATAGGCTTTCCAAGAAAGGATGACAGCA
GCTACCCAAGCACTACTGAAAAGGATAAAGAGCTTTAGGATAAAGTCAAA
CCTACTGAGGAGAAAGCCAGGTCATTTTTCTTGAGAACAGCATTCCTCTG
CTCCATGGAAAAGCATCCGCTTGCCCTATGGCTCATCCACTCCCCTAAAT
AAACTCTGACTTTTCCAAAAGAAAAATAAAAACCCCCGGGGGCGGGGCCC
ATTTATTGGGAAATAAAAAAAAAATGGCCACGGTTGTGTTCACCCCAAAA
TTTTTTATAGCCACTACCCTTTTAAAATGGGAAAAAAACCTAAAATTTTT
TTCTCCTTGCCCCTTTTTTGGGGTTCCCCAATAAAAATTTTCTCTTTTAT
TTTTTTACAAAAAAAAACCCCCCTCTTTTATTTATACCCAATTTTCTTCC
CTTTCTTCAN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no434_d20.g1 MSMg01no434_d20.g1 CHROMAT_FILE:
MSMg01no434_d20.g1 PHD_FILE: MSMg01no434_d20.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 18:58:35 2005
         (319 letters)



>mm_chr9_80828131_80828849
          Length = 719

 Score =  571 bits (295), Expect = e-167
 Identities = 313/319 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   cttaggagcaggcagcagaaatctgagactcacagaaaatggaattaagcaaatgttcta 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 519 cttaggagcaggcagcagaaatctgagactcacagaaaatggaattaagcaaatgttcta 460

                                                                       
Query: 61  tttataaacagaatgataatacaggagtgagtgctggaaagaacttaaacacatcccaaa 120
           |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 459 tttataaacagaataataatacaggagtgagtgctggaaagaacttaaacacatcccaaa 400

                                                                       
Query: 121 atgagtggaatgtaagcattgggcctggaggaagatgttggtgatcacagaaagacagaa 180
           |||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||
Sbjct: 399 atgagtggaatgtaagcattgggcctggaggaagatgttggtgatcactgaaggacagaa 340

                                                                       
Query: 181 ggtagactggaaggacactttagggaaacttcaattcaatgttggattggtataagagtt 240
           ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct: 339 ggtagactggaaggacactttagggaaacttcaattcgatgttggattggtataagagtt 280

                                                                       
Query: 241 ttcatttgtcataggctttccaagaaaggatgacagcagctacccaagcactactgaaaa 300
           |||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 279 ttcatttgccatatgctttccaagaaaggatgacagcagctacccaagcactactgaaaa 220

                              
Query: 301 ggataaagagctttaggat 319
           |||||||||||||||||||
Sbjct: 219 ggataaagagctttaggat 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 14
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 319
Length of database: 719
Length adjustment: 9
Effective length of query: 310
Effective length of database: 710
Effective search space:   220100
Effective search space used:   220100
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)