TCAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGG
AATTCCTTCCCTCCCTCCCTCCTTCCCTCCCTCTCCCAATCTCCTTTTTC
CTCCCAATTTTTCTGTTGCTCAGCCTGCTCTCTAACTTTTCTCTTTCTTC
ACGGTTTTGATCTCTTTCTATCATGACATGTCAGTTGAACACAAGCCAAC
ACTCTTACAATTGTGAGCTGAAGTATGCCTCACCCCTTTTTAATTTGGTT
TGTCAAGTTTGTCATAATGACTCAAAACTGACTACTAAGAGAGAGACCCT
GGCTAACTAATCCTGTCAAATTTCCTGATGGAGGATACTAAACTGTTGCA
TGTTTAAATCAGAGTTAATATTTTGACATTTTAGTAGTCACCTGATCACT
GTTTTTTTTTTTAAGGAAAATGTCAAATATTTAGAGTTCTTCCAATAGCA
GCTTCAAGTTTATAGCCTAAGAATTAGGCAGCTTTGACTAAAATCCTAAA
CCTATCACTTGACAGCTCCTTCTCACAGGGCAAATGTCTTTACTCCTATA
CGTTTATTCTGCCAATATTAGCGTCTATTCTGAGGATGACTGACATGACT
AACACAAAATTTTACAAAGCAATTAATACAGCTTCTACTGCCAAGAGAGG
GTTTATAACCTGTAAATGTTTATTTCTTGGAGGGGGGGAATTTTTTTCTT
GAATTTCCCTGGTTATAATCTTAATGATTTGCAGACTCAAATCATGGTCC

CGATGCXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXTTAATCATATTTTGTCTCCATGTTT
TAAAAGTCTATTCTTTGTATCTTAGTATCACTGGTTTTGTGTGTTTGTTT
GTTTGTTTGTTTGTTTATTTTTCAGGGCTTGCTGNTTATGGTACTGTAGT
ACACTGTGTTTCTTTTGATTCGGTTGTGACGGTTTCTCTGAGTGTTATTG
TTTTGGTAAACCTGCTAGTACCAGTGATGGCCGTGAGACATACTTTGCCG
ACGGACGCAGGGGGGATTTTTTTTTTGGGGATCAGCAGGGGAGACCGGCA
GGTGGAGGTATTTTTACACCCCGCGCGCCAGGGGGGGGGAGCCGTGGGGC
CGTACCGGATCGGGTTCCCCCCCACCCCTCAAACCTATCCCTGCACCCCG
TCTTGACACCCCCTCGTCACCGCGGCCAGACATCATGCTATATTTCCGGT
CCACCCGTCCCCCCCTCCTTTTTTCTTTTCTCCATTTCCCCCCTCCCTTA
CGTGGACGCCTCCCCTTCTTTCTTCTCTCCCCTCTACTCCGTACTTCTAC
CAGCCCCCCACTATTCTACCTCTCCCCTTTCTCCCCCCTCCCCTTTTTTC
CCCCTCTTCCCCTTTTCACCTCTAACCTCCCCGACCCCCGCCCCCCACCC
TCTTCTTGTGTCCCCTACCCCCTCCCCCACCCCCCACCCTTTCACCCCCC
TCTACCCTCTTTCG

Query= MSMg01no435_k04.b1 MSMg01no435_k04.b1 CHROMAT_FILE:
MSMg01no435_k04.b1 PHD_FILE: MSMg01no435_k04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:27 2005
         (515 letters)



>mm_chr9_33250753_33251667
          Length = 915

 Score =  820 bits (424), Expect = 0.0
 Identities = 486/512 (94%), Gaps = 9/512 (1%)
 Strand = Plus / Plus

                                                                       
Query: 13  tccctccctccctccttccctccctctcccaatctcctttttcctcccaatttttctgtt 72
           ||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 204 tccctccctccctccctccctccctctcccaatctcctttttcctcctaatttttctttt 263

                                                                       
Query: 73  gctcagcctgctctctaacttttctctttcttcacggttttgatctctttctatcatgac 132
           |||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||
Sbjct: 264 gctcagcctgctctctaacttttctctttcttcacggttttgatatttttctatcatgac 323

                                                                       
Query: 133 atgtcagttgaacacaagccaacactcttacaattgtgagctgaagtatgcctcacccct 192
           |||||| ||||||||| |||| ||| ||||||||||||||||||||||||||||||||||
Sbjct: 324 atgtcatttgaacacaggccagcacccttacaattgtgagctgaagtatgcctcacccct 383

                                                                       
Query: 193 ttttaatttggtttgtcaagtttgtcataatgactcaaaactgactactaagagagagac 252
           ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 384 ttttaatttggtttgtcaagtttgttataatgactcaaaactgactactaagagagagac 443

                                                                       
Query: 253 cctggctaactaatcctgtcaaatttcctgatggaggatactaaactgttgcatgtttaa 312
           ||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 444 ccttgctaactaatcctgtcaaatttcctgatggaggatactaaacttttgcatgtttaa 503

                                                                       
Query: 313 atcagagttaatattttgacattttagtagtcacctgatcactgtttt---------ttt 363
           ||| ||||||||||||||||||||||||||||||||||||||||||||         |||
Sbjct: 504 atcggagttaatattttgacattttagtagtcacctgatcactgttttgttttgtttttt 563

                                                                       
Query: 364 ttttaaggaaaatgtcaaatatttagagttcttccaatagcagcttcaagtttatagcct 423
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 564 ttttaaggaaaatgtcaaatatttagagttcttccaatagcagcttcaagtttatagcct 623

                                                                       
Query: 424 aagaattaggcagctttgactaaaatcctaaacctatcacttgacagctccttctcacag 483
           ||||||||| |||||||||||||||||||||| ||||||||| |||||||||||||||||
Sbjct: 624 aagaattagacagctttgactaaaatcctaaatctatcacttaacagctccttctcacag 683

                                           
Query: 484 ggcaaatgtctttactcctatacgtttattct 515
           ||||||||||||||||||||||| ||||||||
Sbjct: 684 ggcaaatgtctttactcctatacatttattct 715


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 515
Length of database: 915
Length adjustment: 10
Effective length of query: 505
Effective length of database: 905
Effective search space:   457025
Effective search space used:   457025
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)