BAC Information

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BAC

Clone NameMSMg01-435M24
Chromosome9 (Build37)
Map Location 25,900,054 - 25,900,391
singlet/doubletsinglet
Overlap genenone
Upstream geneHerpud2, LOC666297, 9130004C02Rik, Sept7, EG666327, 2310005P05Rik
Downstream geneB3gat1, BC038479, Glb1l3, Gm1110, LOC330907, Acad8, Thyn1, Vps26b, Ncapd3
LinkOpen Mouse BAC browser

no map image available.



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-435M24.T7 (MSMg01no435_m24.b1)MSMg01-435M24.TJ (MSMg01no435_m24.g1)
ACCAG527030AG527031
length830825
length of high quality
(start - end)		378 (42 - 419)338 (71 - 408)
definitionCHROMAT_FILE: MSMg01no435_m24.b1 PHD_FILE: MSMg01no435_m24.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:42 2005CHROMAT_FILE: MSMg01no435_m24.g1 PHD_FILE: MSMg01no435_m24.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:00:42 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATT
CAATTGAAAATCCAGAAATAAACCTACACAGCTAAGAACACTTAATTTTT
GACAAAGAAGCTAAAAACCATACAGCAGAATAAAGAAAGTATCTTTAACA
AATGATGTTAGTCTAACTGGAGGTCTGCATGTAGAAGAATGTAAATAGAT
CCATATCTGCACAAAACTCAAGTACAAGTGGATCAAAGACCACAAGATAA
AAGCAGACACACTATATCTAACCAAAAAGAAAGTAGGGGAACTGCCTTGA
ATACATTGGGAATGGAGATAACTTCCTGAATATAATACTAATAGTTCAGA
TACAAAGATCCAAAATTAATAAATGAGACCTCATGAAATGGAAAGGCTTC
TGTAAAGCAAAGGACACAATCAATAGGACCAAATGGGAGTCTACAGATTG
GGGAAAGATCTTCACCAACCCTACATTCAGCAGAGGGGTATTATCTAAAA
TATTTTAAGAAACTCTCGAAATTAAATTTCCCTTAACCCAATAACCTAAT
TTTATAAGGGGCTCTCCAACTTATTTTTGAATTTTTCCTCGCAGATTTTT
TTAATGGGGGGGGAAAATTTTTAACTATTGGTCTTTGCCCTCCCCCTCCC
GGTATATCCTATCTTATATTACCTTGGGGATTTTCCTCTTAACCCCCCCT
CTGCCTTAATATATACTTCTAACTGTCCTTCCTCCTCCTGTGGTTTTTTT
TTTTTATGACCATTCTTTCCCTTTGTGTTAAACTAATTAGTTTTATCACT
TTTCTCCTTTATTGGCTCTTTTTATCTTTN

TGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXACTGCTCTATAGGACAATAGAACAGCAAAG
CTGTCCTTGGCCGCAGGAAAGTGTGAGATGCACAGGAGCTGAATGTCTGT
GCTAGTCTGGCAGAGAGATCCTGCTCCTTTACTCATCGGGGAAGTCTTTC
TTTCCTAAGAAGTGCTTTGTGAAGAGAAAATGGTAAAGCCCATGTCCGAG
GCCGAGAAGAGACTAGTCATAGCTGTAGATATGCTGGACAGCATCTCCTT
GTTCAAGAGTGCTTGAGTTTCTCTTAAGAACAATTCTGCATTCTGAGCTT
GCAAAATACTGTCAGATGTATTTCTAATTACTCAGAGATTTCTGTAACTC
CTTTATCATTGCACTAAGTCCTAAAACCATTAATAAAACTTAAATGATTT
TCTTGTTTAGCCCCATGGACAAATCCTATAGACACCCTCCTTCCGCCCTT
CCTGCCTCTACCTCTATATCTTTTTTCCCTCACCCTCCTTTTTAAAGGGA
ATCCTCTCTATTCCCGTTTAATTCTAGTTCAAACCCCCTCCCCTCTTTTC
TTTTGATCCCACTCTTTATATAACGGTTTTCCCCTATTTCCCCCCTTTTT
TTGCCAAAAGGGATTTTTATCTGCCTTACCTTTATTTTTGGCGTCGCTTT
CCTTTTCGTAAATACACTTCTTTTTCCCCTTGCCCCCCTCCTAGCTATTT
TTTTATTTCCTTCTCCTTTTTCCCTCTCCCTCCATCCCTTTTTCTCTTCT
TTTTCACCTCTTCTCTCCTTTTTTG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no435_m24.g1 MSMg01no435_m24.g1 CHROMAT_FILE:
MSMg01no435_m24.g1 PHD_FILE: MSMg01no435_m24.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:00:42 2005
         (338 letters)



>mm_chr9_25899854_25900591
          Length = 738

 Score =  638 bits (330), Expect = 0.0
 Identities = 336/338 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   actgctctataggacaatagaacagcaaagctgtccttggccgcaggaaagtgtgagatg 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 actgctctataggacaatagaacagcaaagctgtccttggccgcaggaaagtgtgagatg 260

                                                                       
Query: 61  cacaggagctgaatgtctgtgctagtctggcagagagatcctgctcctttactcatcggg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 cacaggagctgaatgtctgtgctagtctggcagagagatcctgctcctttactcatcggg 320

                                                                       
Query: 121 gaagtctttctttcctaagaagtgctttgtgaagagaaaatggtaaagcccatgtccgag 180
           ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 gaagtctctctttcctaagaagtgctttgtgaagagaaaatggtaaagcccatgtccgag 380

                                                                       
Query: 181 gccgagaagagactagtcatagctgtagatatgctggacagcatctccttgttcaagagt 240
           || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 gctgagaagagactagtcatagctgtagatatgctggacagcatctccttgttcaagagt 440

                                                                       
Query: 241 gcttgagtttctcttaagaacaattctgcattctgagcttgcaaaatactgtcagatgta 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcttgagtttctcttaagaacaattctgcattctgagcttgcaaaatactgtcagatgta 500

                                                 
Query: 301 tttctaattactcagagatttctgtaactcctttatca 338
           ||||||||||||||||||||||||||||||||||||||
Sbjct: 501 tttctaattactcagagatttctgtaactcctttatca 538


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 338
Length of database: 738
Length adjustment: 9
Effective length of query: 329
Effective length of database: 729
Effective search space:   239841
Effective search space used:   239841
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)


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