MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-438A06
Chromosome	9 (Build37)
Map Location	51,648,597 - 51,649,085
singlet/doublet	singlet
Overlap gene	Arhgap20
Upstream gene	Alg9, Ppp2r1b, Snf1lk2, Layn, 4833427G06Rik, Btg4, LOC100042825, Pou2af1, Gm684, 1810046K07Rik, LOC100042854, LOC640374, LOC668070
Downstream gene	LOC629554, LOC100043409, Fdx1, EG629557, Rdx, 9830163H01Rik, Zc3h12c, LOC100042876, AI593442, Gm1715
Link	Open Mouse BAC browser

Click to get alignment info.

name	Alg9 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:102580 MGI:1924753
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Ppp2r1b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:73699 MGI:1920949
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Snf1lk2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:235344 MGI:2445031
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Layn (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:244864 MGI:2685357
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 9 ESTs, 4 Proteins

name	4833427G06Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:235345 MGI:1921013
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Btg4 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:56057 MGI:1860140
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC100042825 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042825
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Pou2af1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18985 MGI:105086
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Gm684 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:270157 MGI:2685530
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	1810046K07Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:69809 MGI:1917059
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 3 ESTs, 2 Proteins

name	LOC100042854 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042854
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins pseudo : _no_value

name	LOC640374 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:640374
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 17 mRNAs, 933 ESTs, 23 Proteins

name	LOC668070 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:668070
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 811 ESTs, 5 Proteins pseudo : _no_value

name	Arhgap20 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:244867 MGI:2445175
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	LOC629554 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:629554
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	LOC100043409 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043409
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs

name	Fdx1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:14148 MGI:103224
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG629557 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:629557 MGI:3646966
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 mRNAs, 90 ESTs, 25 Proteins

name	Rdx (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:19684 MGI:97887
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	9830163H01Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:414109 MGI:3041213
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zc3h12c (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:244871 MGI:3026959
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 24 ESTs, 11 Proteins

name	LOC100042876 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100042876
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins

name	AI593442 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:330941 MGI:2143099
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 2 mRNAs

name	Gm1715 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:382139 MGI:2686561
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST

name	Alg9 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:19527201 GeneID:102580 MGI:1924753
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : asparagine-linked glycosylation 9 homolog (yeast, alpha 1,2 mannosyltransferase) transcript_id : NM_133981.1

name	Ppp2r1b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:77539769 GeneID:73699 MGI:1920949
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), beta isoform transcript_id : NM_001034085.1

name	Ppp2r1b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:77539775 GeneID:73699 MGI:1920949
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), beta isoform transcript_id : NM_028614.2

name	Snf1lk2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:38569496 GeneID:235344 MGI:2445031
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : SNF1-like kinase 2 transcript_id : NM_178710.3

name	Layn (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149259960 GeneID:244864 MGI:2685357
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 9 ESTs, 4 Proteins product : layilin transcript_id : XM_146887.7

name	4833427G06Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142344151 GeneID:235345 MGI:1921013
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4833427G06 gene transcript_id : NM_177702.3

name	Btg4 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142353275 GeneID:56057 MGI:1860140
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : B-cell translocation gene 4 transcript_id : NM_019493.3

name	LOC100042825 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149259929 GeneID:100042825
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC100042825 transcript_id : XM_001478900.1

name	Pou2af1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:118130242 GeneID:18985 MGI:105086
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : POU domain, class 2, associating factor 1 transcript_id : NM_011136.2

name	Gm684 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94386104 GeneID:270157 MGI:2685530
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : gene model 684, (NCBI) transcript_id : XM_196479.4

name	1810046K07Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149259962 GeneID:69809 MGI:1917059
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 3 mRNAs, 3 ESTs, 2 Proteins product : RIKEN cDNA 1810046K07 gene, transcript variant 1 transcript_id : XM_134800.6

name	LOC640374 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149259963 GeneID:640374
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 17 mRNAs, 933 ESTs, 23 Proteins product : similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) transcript_id : XM_001480150.1

name	Arhgap20 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:47575839 GeneID:244867 MGI:2445175
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : Rho GTPase activating protein 20 transcript_id : NM_175535.3

name	LOC100043409 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149259966 GeneID:100043409
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 ESTs product : hypothetical protein LOC100043409 transcript_id : XM_001480159.1

name	Fdx1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:6679764 GeneID:14148 MGI:103224
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : ferredoxin 1 transcript_id : NM_007996.1

name	EG629557 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94386106 GeneID:629557 MGI:3646966
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 7 mRNAs, 90 ESTs, 25 Proteins product : predicted gene, EG629557 transcript_id : XM_894456.2

name	Rdx (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142353663 GeneID:19684 MGI:97887
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : radixin transcript_id : NM_009041.2

name	9830163H01Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:47894414 GeneID:414109 MGI:3041213
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 9830163H01 gene transcript_id : NM_001001500.1

name	Zc3h12c (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:94386107 GeneID:244871 MGI:3026959
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 mRNAs, 24 ESTs, 11 Proteins product : zinc finger CCCH type containing 12C transcript_id : XM_146893.6

name	LOC100042876 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149259932 GeneID:100042876
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 2 Proteins product : similar to Btf3 protein transcript_id : XM_001478980.1

name	AI593442 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:31342698 GeneID:330941 MGI:2143099
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : expressed sequence AI593442 transcript_id : NM_177907.2

name	AI593442 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142381639 GeneID:330941 MGI:2143099
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : expressed sequence AI593442 transcript_id : NM_178906.3

name	Gm1715 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149259934 GeneID:382139 MGI:2686561
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : gene model 1715, (NCBI) transcript_id : XM_001478987.1

name	Alg9 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:19527202 CCDS:CCDS23175.1 GeneID:102580 MGI:1924753
definition	GO_component : GO:0005783 - endoplasmic reticulum [Evidence IEA]; GO:0016020 - membrane [Evidence IEA] GO_function : GO:0016740 - transferase activity [Evidence IEA]; GO:0016757 - transferase activity, transferring glycosyl groups [Evidence IEA] codon_start : 1 product : disrupted in bipolar disorder 1 homolog protein_id : NP_598742.1

name	Ppp2r1b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:77539770 GeneID:73699 MGI:1920949
definition	GO_function : GO:0005488 - binding [Evidence IEA] codon_start : 1 note : isoform a is encoded by transcript variant 1 product : protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), beta isoform isoform a protein_id : NP_001029257.1

name	Ppp2r1b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:77539776 GeneID:73699 MGI:1920949
definition	GO_function : GO:0005488 - binding [Evidence IEA] codon_start : 1 note : isoform b is encoded by transcript variant 2 product : protein phosphatase 2 (formerly 2A), regulatory subunit A (PR 65), beta isoform isoform b protein_id : NP_082890.2

name	Snf1lk2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38569497 GeneID:235344 MGI:2445031
definition	GO_component : GO:0005737 - cytoplasm [Evidence IDA]; GO:0005634 - nucleus [Evidence IDA] GO_function : GO:0005524 - ATP binding [Evidence IDA] [Evidence IEA]; GO:0016301 - kinase activity [Evidence IEA]; GO:0000287 - magnesium ion binding [Evidence IDA] [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0004672 - protein kinase activity [Evidence IEA]; GO:0004674 - protein serine/threonine kinase activity [Evidence IDA]; GO:0016740 - transferase activity [Evidence IEA] GO_process : GO:0008286 - insulin receptor signaling pathway [Evidence IDA]; GO:0006468 - protein amino acid phosphorylation [Evidence IDA]; GO:0007243 - protein kinase cascade [Evidence IDA]; GO:0046626 - regulation of insulin receptor signaling pathway [Evidence IDA] codon_start : 1 note : salt induceable kinase 2 product : SNF1-like kinase 2 protein_id : NP_848825.2

name	Layn (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149259961 GeneID:244864 MGI:2685357
definition	codon_start : 1 product : layilin protein_id : XP_146887.7

name	4833427G06Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29244154 GeneID:235345 MGI:1921013
definition	codon_start : 1 product : hypothetical protein LOC235345 protein_id : NP_808370.1

name	Btg4 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:31982714 GeneID:56057 MGI:1860140
definition	GO_component : GO:0005575 - cellular_component [Evidence ND] GO_function : GO:0003674 - molecular_function [Evidence ND] GO_process : GO:0045930 - negative regulation of progression through mitotic cell cycle [Evidence IDA] codon_start : 1 product : B-cell translocation gene 4 protein_id : NP_062366.2

name	LOC100042825 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149259930 GeneID:100042825
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001478950.1

name	Pou2af1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6755128 CCDS:CCDS23176.1 GeneID:18985 MGI:105086
definition	GO_component : GO:0005634 - nucleus [Evidence IEA]; GO:0005667 - transcription factor complex [Evidence IEA] GO_function : GO:0003677 - DNA binding [Evidence IDA]; GO:0005515 - protein binding [Evidence IPI]; GO:0003700 - transcription factor activity [Evidence IEA] GO_process : GO:0006355 - regulation of transcription, DNA-dependent [Evidence IEA]; GO:0006350 - transcription [Evidence IEA] codon_start : 1 product : POU domain, class 2, associating factor 1 protein_id : NP_035266.1

name	Gm684 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:38090334 GeneID:270157 MGI:2685530
definition	codon_start : 1 product : similar to LOC120376 protein protein_id : XP_196479.2

name	1810046K07Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:20888581 GeneID:69809 MGI:1917059
definition	codon_start : 1 product : hypothetical protein LOC69809 isoform 1 protein_id : XP_134800.1

name	LOC640374 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149259964 GeneID:640374
definition	codon_start : 1 product : similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) protein_id : XP_001480200.1

name	Arhgap20 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:47575840 CCDS:CCDS23177.1 GeneID:244867 MGI:2445175
definition	GO_component : GO:0005622 - intracellular [Evidence IEA] GO_function : GO:0005096 - GTPase activator activity [Evidence IEA] GO_process : GO:0007165 - signal transduction [Evidence IEA] codon_start : 1 product : Rho GTPase activating protein 20 protein_id : NP_780744.2

name	LOC100043409 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149259967 GeneID:100043409
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001480209.1

name	Fdx1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6679765 CCDS:CCDS23178.1 GeneID:14148 MGI:103224
definition	GO_component : GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0051537 - 2 iron, 2 sulfur cluster binding [Evidence IEA]; GO:0009055 - electron carrier activity [Evidence IEA]; GO:0005506 - iron ion binding [Evidence IEA]; GO:0051536 - iron-sulfur cluster binding [Evidence IEA]; GO:0046872 - metal ion binding [Evidence IEA] GO_process : GO:0006118 - electron transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 note : adrenodoxin product : ferredoxin 1 protein_id : NP_032022.1

name	EG629557 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82930042 GeneID:629557 MGI:3646966
definition	codon_start : 1 product : similar to Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) protein_id : XP_899549.1

name	Rdx (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6677699 GeneID:19684 MGI:97887
definition	GO_component : GO:0005737 - cytoplasm [Evidence IEA]; GO:0005856 - cytoskeleton [Evidence IEA]; GO:0016020 - membrane [Evidence IEA]; GO:0005902 - microvillus [Evidence IDA] GO_function : GO:0003779 - actin binding [Evidence IEA]; GO:0005488 - binding [Evidence IEA]; GO:0008092 - cytoskeletal protein binding [Evidence IEA]; GO:0005515 - protein binding [Evidence IPI]; GO:0005198 - structural molecule activity [Evidence IEA] GO_process : GO:0045176 - apical protein localization [Evidence IMP]; GO:0051016 - barbed-end actin filament capping [Evidence IEA]; GO:0030033 - microvillus biogenesis [Evidence IMP] codon_start : 1 exception : mismatches in translation product : radixin protein_id : NP_033067.1

name	9830163H01Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:47894415 GeneID:414109 MGI:3041213
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC414109 protein_id : NP_001001500.1

name	Zc3h12c (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:94386108 GeneID:244871 MGI:3026959
definition	codon_start : 1 product : similar to hCG39183 protein_id : XP_146893.6

name	LOC100042876 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149259933 GeneID:100042876
definition	codon_start : 1 product : similar to Btf3 protein protein_id : XP_001479030.1

name	AI593442 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:29244544 GeneID:330941 MGI:2143099
definition	codon_start : 1 note : isoform 1 is encoded by transcript variant 1 product : hypothetical protein LOC330941 isoform 1 protein_id : NP_808575.1

name	AI593442 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:30725766 GeneID:330941 MGI:2143099
definition	codon_start : 1 exception : unclassified translation discrepancy note : isoform 2 is encoded by transcript variant 2 product : hypothetical protein LOC330941 isoform 2 protein_id : NP_849237.1

name	Gm1715 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149259935 GeneID:382139 MGI:2686561
definition	codon_start : 1 product : hypothetical protein protein_id : XP_001479037.1

name	LOC100042854 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042854
definition	number : 2 pseudo : _no_value

name	LOC100042854 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100042854
definition	number : 1 pseudo : _no_value

name	LOC668070 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149259965 GeneID:668070
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 811 ESTs, 5 Proteins product : similar to ribosomal protein L9 pseudo : _no_value transcript_id : XR_034563.1

name	LOC629554 (CDS detail)
type	misc_RNA
link	vega ensembl NCBI
xref	GI:149259931 GeneID:629554
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 EST product : hypothetical protein LOC629554 transcript_id : XR_035395.1

clone name	MSMg01-386C03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-209A12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-062D09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-340K12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-308M17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-405B18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-437H24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-370K22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-525A16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-545D06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-199P15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-383L16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-169C02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-489H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-317K04
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-417D13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-378E13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-057I08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-116O05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-122L16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-455J22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-338L08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-340G09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-394B14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-134N08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-332B13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-178H24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-148B09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-319N07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-172F14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-437K14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-062D06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-432G08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-237C01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-375G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-380H10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-508H22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-540J21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-409L22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-348O15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-237K24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-478H13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-059I12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-438A06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-369G03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-459F15
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-371F09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-381B10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-495F07
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-155M19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-543G02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-300B22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-292F22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-081E17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-451L18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-495J09
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-125N13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-116D20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-408C17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-132M17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-331N11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-474M18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-144G17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-234A09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-331A18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-112E23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-399F12
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-361F10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-479P09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-355D11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-172J10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-367O19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-151M03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-520D15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-470H01
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-507O21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-372C17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-461J21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-413A06
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-277N11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-146H08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-327L24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-090M15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-090J10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-479D05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-268B18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-395C14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-507M16
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-083N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-087B24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-475A16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-344N02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-507C08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-157N09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-069D18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-228A12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232M13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-062J08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-081J15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-214L09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-238N06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-213J07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-241K05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-245C05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-170F02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300C04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-192I15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-209N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-188H12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-291G13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-256P01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-008A19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-342H15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-095A01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-098H09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-131F03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-167A24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-069O02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-159B08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-259P22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-069P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-235D24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-322G21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-043P03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-036I20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-347I24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343N11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-163P20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-176E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-204O02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-218K17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-064P07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177I21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-006O15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-056M04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-245G24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-229P09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-085B12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-157P04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331G14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-226C22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242L12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-346G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-053F02
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-147H06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-029O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084O20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-237B07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292G12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-216G04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-137I10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300G08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-042B17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-205I24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-344B13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-205D01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-049O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-066J21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-210E20
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-196J19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194G03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-047D15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-124D05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-034E20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141I17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-331J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-281N18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002E07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-165O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-168E04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-048H18
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-161H04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-109H06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-014B07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-148I12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-254O06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-093E22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-115G19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-039D05
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-156O12
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-068L14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-141O24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-305G20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-300J10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-002E14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-232J07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-040A22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-072O11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292I19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-244J06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-003J21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-199C19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036K16
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-438A06.T7 (MSMg01no438_a06.b1)	MSMg01-438A06.TJ (MSMg01no438_a06.g1)
ACC	AG528709	AG528710
length	757	1,034
length of high quality (start - end)	497 (34 - 530)	---
definition	CHROMAT_FILE: MSMg01no438_a06.b1 PHD_FILE: MSMg01no438_a06.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:37 2005	CHROMAT_FILE: MSMg01no438_a06.g1 PHD_FILE: MSMg01no438_a06.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:37 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	XXXXXXXXXXXXXXXXXXXXXXXXXXXTTCAGGATCCGCGGAATTCTGGA ATCGATTTCCACCTTGACTGTGAATCCATCTTTGTGATAGCATCTGTGTT GAAGGTAGGGAAGGCTTAACCAACGTGGACCCCAGCCTTTAGCTCCAGAT GTAAAATCCATTCCATTTATTTCTGTGTGCAAAGAACCAGGACAGATTTA GAATCGATATTTTTTTTAAACAAACAAACATTTCACAGAGCAGCCTTGGA CTTTGAAGGCCACCCCGCTGATGGGACACAATAGCTCATCATCACTATTA GCACCTCAGACACAAAAGCAAACCTGAGTGAAACGGTGTACCACCATCAG AACACACAGAGGGCGTTTTACCACAACCAACATCCAACTTTCCCAAGATC CTCGAAGTGTTTTCAAACCCAAACGAGAGTTTTGTGCTTGCCATGATATG GAGAGGAGTTGCTTGTGCCACCTAAAATCCCATGTTACCTGTAACTACTC GTGCACTCTGTTCTAAACGGAGAGAGCGGGGATGGCTGGGCCTTCTGCCA CAGAAATTTCTAACATCATCTCTTCGTCACATTCTTAGAAACGTCCTAGG ATTTTGAAAGCAGAAACAAGGGAGCTGTGAGCAGAACTTTTGACCATAGT GACAGGTTTTTGCAGACTTGCCCCAGACTTCCATTTCTCAGAAGGGTCGT GATATACTTGATCCAGGGGTAGACAAGGCCCCATGGCTCACCTGAAGAAC TGGAAGN	AACACAAATATAAAATTTATAAACTATGTTCTCTCTACTTTTATTGCCTT CTTCTCTATTTCTTTTTTAATATTTATATTATACAATAATAAAAATCACA ATACACAATCTAATATTATTTTATATTCTCTATTCTTTATCATCTATATT AATTAACTATACAACACTAATATATTTATACTCATTAAAACTATCAAATA TATAATAAATAAACAATAACTTTAATAATACATAATAAATAAAACATATA TCATCAATTATTATATATAATTATATATAGCGAACTGAAGACTCGCGTAT ATAATAATACGCGTATAATAAACGCGAATAAATCGACGATTAGGATAATC GATAAGGAATTCTCGTTAATGCGATAATACGCGTACGAACGTAAAGTACG AAGATNAGCGTAATCGTTAGAGCACAGAGTATACGAGTAACGACGTAGAT AAAAGAGATAACTAAAATCGAAGAAACGATATATTAGATATACAAAAATA ATAATTTATCAAATATATAAACATATAAAATTAAACATATATATATTAAT ACAAACAACATAATAATATATAAAAATCTAAATAACAAAATATAATATAC AATTCAAAAAAATAACAACAAATATTTATAACATATAACTATTCCCCTTT TTAATCAAACATACTAAATTAATATCATCATCTTTACACATAACAATTTT TATAATAACTTCAAATCCTCACTTATCTTTATCTACTTATAACTATATAT CTATATCTCTATATTATAATAATCAACATATATATTATAACTTCTAATAT TTAATTTTATCTAATACAATTCTCATTTATTCTAATCATAATATCTTAAA TATATCCTCACTACACTCATACATCTAACTATTTCTATCAATCACCTTCT AATAATATCAAATATAATATAACCTCATAATTTATACTCAATATTCATAA TTAATCCACATATCCAACACTTATATTATCATTCAACTAATAAATTATAT CATATTCATTACTATATTCAATATTATAAATCTC
quality values	Open. Hide. 32 37 37 37 37 32 21 19 10 10 10 19 19 47 48 48 35 28 28 28 28 31 27 27 9 9 9 9 11 11 16 8 15 15 24 24 28 47 48 48 36 36 36 36 36 36 50 50 31 31 33 33 22 17 9 9 9 11 20 12 12 12 25 25 33 33 33 33 33 50 50 36 36 36 36 38 38 53 53 53 59 57 57 57 47 47 47 47 47 47 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 68 68 68 68 68 68 68 68 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 62 62 62 62 62 62 68 62 68 68 68 68 68 68 68 38 38 20 24 24 32 41 44 62 68 62 62 62 62 62 62 62 52 52 52 52 52 43 44 35 43 43 59 59 68 68 68 59 59 59 59 59 44 44 31 31 42 44 57 57 57 57 59 59 59 41 41 20 20 23 38 36 27 27 20 20 27 27 43 43 57 57 57 57 57 57 57 57 57 57 68 59 59 59 59 59 59 59 59 59 59 59 57 52 52 52 52 52 57 57 52 52 52 50 57 57 57 57 57 57 57 57 57 57 57 50 50 57 57 59 59 59 57 57 48 48 47 57 57 57 57 57 59 59 59 57 57 57 57 57 57 57 57 57 68 68 68 68 68 68 68 68 68 57 57 57 57 57 57 57 57 57 57 57 57 57 57 59 59 68 57 57 57 57 48 48 57 48 48 48 48 48 57 48 48 48 48 48 48 48 48 47 59 47 47 43 59 41 34 34 41 43 41 41 41 42 41 48 48 48 48 48 48 48 57 47 47 39 39 39 39 47 48 57 59 57 57 48 57 57 54 54 48 57 46 54 54 48 46 46 46 48 43 43 39 47 59 57 57 57 57 57 57 57 57 48 48 43 43 43 43 43 39 40 43 25 25 34 34 32 28 28 23 19 17 19 23 21 13 15 18 22 26 33 24 24 34 34 37 47 41 41 41 39 37 36 32 25 25 25 30 32 33 37 37 39 39 39 39 39 32 32 30 39 39 57 43 34 28 25 25 33 33 37 33 33 32 37 21 18 11 8 8 8 8 17 19 37 40 37 37 30 30 37 23 19 11 9 10 8 18 11 25 27 30 30 30 25 27 30 25 18 12 11 11 12 12 22 23 22 30 25 15 14 9 16 13 10 8 9 12 19 25 30 37 37 32 32 16 15 11 11 11 10 13 15 12 12 14 15 21 22 39 30 33 16 16 10 14 11 14 11 11 11 11 19 23 32 23 20 17 21 16 14 12 18 18 20 19 14 8 8 8 8 8 8 11 8 8 10 9 9 10 9 10 17 15 15 10 10 8 8 6 6 8 8 12 8 15 12 13 8 8 8 8 8 8 15 11 10 10 10 10 10 9 9 8 8 8 8 7 8 8 9 10 8 8 8 11 11 18 11 9 9 9 9 9 9 9 3 0	Open. Hide. 6 6 6 6 6 6 10 8 8 8 10 10 11 14 14 26 8 8 7 7 8 7 9 10 10 8 6 6 6 8 8 8 8 8 7 7 7 7 7 8 11 10 6 6 6 6 6 6 6 6 7 8 10 10 8 8 8 12 10 10 8 8 8 8 10 10 10 10 10 10 10 10 10 10 10 10 10 10 8 8 6 6 6 6 10 11 8 8 8 8 8 8 10 10 9 9 8 7 8 8 8 8 8 10 8 8 8 8 8 8 6 6 12 9 12 14 12 12 9 10 10 10 11 11 11 11 11 9 9 10 10 9 8 8 8 8 8 8 8 11 15 13 11 10 8 10 7 7 8 8 10 8 8 7 7 13 10 8 8 8 8 10 8 10 10 12 9 9 9 9 10 10 10 10 10 10 10 6 6 8 8 9 9 9 10 10 10 9 9 9 9 9 9 11 11 11 10 10 13 8 8 8 8 8 6 6 10 10 8 8 8 8 8 10 10 8 8 8 6 6 6 6 8 8 8 8 8 6 7 6 6 6 6 6 10 10 8 8 8 8 8 9 8 8 6 6 7 8 8 9 9 9 8 8 12 13 6 6 6 6 9 10 10 8 8 8 8 10 10 8 10 8 8 8 8 8 8 8 6 8 8 8 8 8 9 9 7 8 8 8 8 8 6 8 10 17 10 10 10 11 10 10 8 8 6 6 6 6 8 6 6 8 8 8 8 8 8 8 9 9 6 8 10 8 8 8 11 15 8 7 9 9 9 8 8 7 8 8 8 8 6 6 8 8 8 8 8 8 8 9 9 10 8 8 8 8 8 8 6 6 6 6 6 8 8 8 8 9 8 6 6 6 7 8 10 10 8 8 7 7 8 9 8 8 8 8 8 8 9 9 9 8 8 8 8 8 8 6 7 10 8 8 8 8 3 0 3 8 8 8 8 8 10 8 8 8 9 9 9 9 8 8 6 6 6 6 8 10 7 7 8 8 8 8 8 10 8 8 8 8 8 8 8 8 7 7 8 8 6 6 6 8 8 9 13 15 10 10 14 15 10 8 8 8 6 7 6 6 8 8 8 8 8 11 8 6 6 6 8 8 8 8 8 8 8 8 7 8 8 9 10 11 11 11 12 10 9 9 8 8 8 7 7 8 7 10 8 8 8 8 8 6 6 6 8 8 8 8 8 8 8 8 8 8 8 8 8 10 15 10 10 8 8 13 10 9 9 9 12 12 14 14 11 13 10 12 10 10 8 8 10 9 9 8 8 10 10 8 8 8 6 6 6 6 10 8 10 7 9 12 12 12 12 8 8 8 6 6 6 6 10 10 11 8 8 8 8 8 12 10 10 10 10 10 8 8 8 8 8 12 11 8 8 8 8 8 8 10 10 8 8 8 8 8 8 8 6 8 6 6 8 8 8 8 6 8 8 7 6 8 8 10 10 12 6 6 8 6 8 8 8 10 15 10 10 10 10 13 15 13 13 10 11 15 10 8 8 8 8 8 8 8 8 13 11 9 10 9 9 9 9 11 8 8 6 6 6 6 6 6 8 8 8 8 8 6 6 6 6 8 8 8 8 8 8 8 10 8 8 13 10 10 9 10 10 10 8 8 8 8 10 10 8 8 8 8 8 8 10 10 10 10 8 8 6 6 8 8 10 9 9 10 10 12 9 9 9 8 8 8 8 8 9 8 8 6 7 10 10 6 6 6 8 12 11 10 10 10 10 10 11 9 10 10 10 6 6 6 6 10 9 12 12 10 9 9 8 8 8 6 7 10 7 6 8 8 11 11 16 11 11 11 8 10 7 6 8 8 8 8 12 10 10 7 7 8 6 7 8 8 8 8 8 7 6 8 8 8 8 8 10 8 6 6 6 6 10 10 9 9 10 10 8 8 8 8 8 8 8 8 8 6 7 6 6 8 6 6 8 8 8 15 12 8 8 8 8 10 10 7 8 8 10 10 8 8 8 8 8 10 8 11 9 9 9 9 8 8 8 8 6 6 6 6 7 12 12 16 10 10 8 8 8 10 8 10 10 8 8 8 8 8 8 8 8 6 6 6 8 13 10 12 13 13 23 13 10 8 8 8 8 10 10 10 10 8 8 8 10 8 8 8 8 11 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 6 8 6 6 8 8 11 10 8 8 6 6 8 12 11 8 8 8 8 8 8 8 8 12 13 7 6 6 6 10 8 8 8 6 6 6 6 6 13 11 22 18 18 16 13 13 8 8 7 8 8 8 9 6 6 6 6 6 10 6 6 6 6 8 8 8 8 10 10 8 11 9 8 8 6 6 6 6 9 8 7 7 7

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no438_a06.b1 MSMg01no438_a06.b1 CHROMAT_FILE:
MSMg01no438_a06.b1 PHD_FILE: MSMg01no438_a06.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:37 2005
         (497 letters)



>mm_chr9_51648390_51649285
          Length = 896

 Score =  909 bits (470), Expect = 0.0
 Identities = 485/490 (98%), Gaps = 1/490 (0%)
 Strand = Plus / Plus

                                                                       
Query: 8   gaattctggaatcgatttccaccttgactgtgaatccatctttgtgatagcatctgtgtt 67
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 208 gaattctggaatcgaagtccaccttgactgtgaatccatctttgtgatagcatctgtgtt 267

                                                                       
Query: 68  gaaggtagggaaggcttaaccaacgtggaccccagcctttagctccagatgtaaaatcca 127
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 268 gaaggtagggaaggcttaaccaacgtggaccccagcctttagctccagatgtaaaatcca 327

                                                                       
Query: 128 ttccatttatttctgtgtgcaaagaaccaggacagatttagaatcgatattttttttaaa 187
           |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 328 ttccatttatttctgtgtgcaaagaaccaggacagatttagaatcgatattttttt-aaa 386

                                                                       
Query: 188 caaacaaacatttcacagagcagccttggactttgaaggccaccccgctgatgggacaca 247
           |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 387 caaacaaacatttcacagagcagccttggactttgaaggccaccccactgatgggacaca 446

                                                                       
Query: 248 atagctcatcatcactattagcacctcagacacaaaagcaaacctgagtgaaacggtgta 307
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 447 atagctcatcatcactattagcacctcagacacaaaagcaaacttgagtgaaacggtgta 506

                                                                       
Query: 308 ccaccatcagaacacacagagggcgttttaccacaaccaacatccaactttcccaagatc 367
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 507 ccaccatcagaacacacagagggcgttttaccacaaccaacatccaactttcccaagatc 566

                                                                       
Query: 368 ctcgaagtgttttcaaacccaaacgagagttttgtgcttgccatgatatggagaggagtt 427
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 567 ctcgaagtgttttcaaacccaaacgagagttttgtgcttgccatgatatggagaggagtt 626

                                                                       
Query: 428 gcttgtgccacctaaaatcccatgttacctgtaactactcgtgcactctgttctaaacgg 487
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 627 gcttgtgccacctaaaatcccatgttacctgtaactactcgtgcactctgttctaaacgg 686

                     
Query: 488 agagagcggg 497
           ||||||||||
Sbjct: 687 agagagcggg 696


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 497
Length of database: 896
Length adjustment: 10
Effective length of query: 487
Effective length of database: 886
Effective search space:   431482
Effective search space used:   431482
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information