MoG+ -Mouse Genome database with high added value-

BAC Information

BAC name
Region	Chromosome -
Gene	search by nearby gene name.
Format	rows / page	Page	1

BAC

Clone Name	MSMg01-438A09
Chromosome	9 (Build37)
Map Location	47,787,298 - 47,787,782
singlet/doublet	singlet
Overlap gene	none
Upstream gene	D930036J05, Cadm1
Downstream gene	LOC100043303, D930028F11Rik, 4432416J03Rik, EG640268, EG434401, LOC667933, Rexo2, Rbm7, EG434402, Nnmt, Zbtb16, Htr3a, Htr3b
Link	Open Mouse BAC browser

Click to get alignment info.

name	D930036J05 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:215467
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST

name	Cadm1 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:54725 MGI:1889272
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 4 mRNAs

name	LOC100043303 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:100043303
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 Protein pseudo : _no_value

name	D930028F11Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:244853 MGI:1924792
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	4432416J03Rik (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:78252 MGI:1925502
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG640268 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:640268 MGI:3646632
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins

name	EG434401 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:434401 MGI:3646416
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 mRNAs, 449 ESTs, 5 Proteins

name	LOC667933 (CDS detail)
type	gene
link	vega ensembl
xref	GeneID:667933
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins pseudo : _no_value

name	Rexo2 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:104444 MGI:1888981
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Rbm7 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:67010 MGI:1914260
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	EG434402 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:434402 MGI:3643566
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 106 ESTs, 2 Proteins

name	Nnmt (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:18113 MGI:1099443
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Zbtb16 (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:235320 MGI:103222
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Htr3a (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:15561 MGI:96282
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	Htr3b (CDS detail)
type	gene
link	vega ensembl MGI
xref	GeneID:57014 MGI:1861899
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA

name	D930036J05 (CDS detail)
type	mRNA
link	vega ensembl NCBI
xref	GI:149259953 GeneID:215467
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 1 EST product : hypothetical protein D930036J05 transcript_id : XM_001479857.1

name	Cadm1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71040101 GeneID:54725 MGI:1889272
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cell adhesion molecule 1 transcript_id : NM_207675.2

name	Cadm1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71040103 GeneID:54725 MGI:1889272
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cell adhesion molecule 1 transcript_id : NM_018770.3

name	Cadm1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71040105 GeneID:54725 MGI:1889272
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cell adhesion molecule 1 transcript_id : NM_207676.2

name	Cadm1 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:71040106 GeneID:54725 MGI:1889272
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : cell adhesion molecule 1 transcript_id : NM_001025600.1

name	D930028F11Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:70778977 GeneID:244853 MGI:1924792
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA D930028F11 gene transcript_id : NM_172921.2

name	4432416J03Rik (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142357233 GeneID:78252 MGI:1925502
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RIKEN cDNA 4432416J03 gene transcript_id : NM_030069.2

name	EG640268 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149259925 GeneID:640268 MGI:3646632
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 4 Proteins product : predicted gene, EG640268 transcript_id : XM_001478763.1

name	EG434401 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149259955 GeneID:434401 MGI:3646416
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 10 mRNAs, 449 ESTs, 5 Proteins product : predicted gene, EG434401 transcript_id : XM_486217.5

name	Rexo2 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141802136 GeneID:104444 MGI:1888981
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : REX2, RNA exonuclease 2 homolog (S. cerevisiae) transcript_id : NM_024233.3

name	Rbm7 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:141801547 GeneID:67010 MGI:1914260
definition	exception : mismatches in transcription note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : RNA binding motif protein 7 transcript_id : NM_144948.3

name	EG434402 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:149259956 GeneID:434402 MGI:3643566
definition	note : Derived by automated computational analysis using gene prediction method: GNOMON. Supporting evidence includes similarity to: 1 mRNA, 106 ESTs, 2 Proteins product : predicted gene, EG434402 transcript_id : XM_001479948.1

name	Nnmt (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:144922620 GeneID:18113 MGI:1099443
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : nicotinamide N-methyltransferase transcript_id : NM_010924.2

name	Zbtb16 (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142382613 GeneID:235320 MGI:103222
definition	note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : zinc finger and BTB domain containing 16 transcript_id : NM_001033324.2

name	Htr3a (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:7305174 GeneID:15561 MGI:96282
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : 5-hydroxytryptamine (serotonin) receptor 3A transcript_id : NM_013561.1

name	Htr3b (CDS detail)
type	mRNA
link	vega ensembl MGI NCBI
xref	GI:142384615 GeneID:57014 MGI:1861899
definition	exception : unclassified transcription discrepancy note : Derived by automated computational analysis using gene prediction method: BestRefseq. Supporting evidence includes similarity to: 1 mRNA product : 5-hydroxytryptamine (serotonin) receptor 3B transcript_id : NM_020274.3

name	D930036J05 (CDS detail)
type	CDS
link	vega ensembl NCBI
xref	GI:149259954 GeneID:215467
definition	codon_start : 1 product : similar to LRRGT00042 protein_id : XP_001479907.1

name	Cadm1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71040102 CCDS:CCDS23149.1 GeneID:54725 MGI:1889272
definition	GO_component : GO:0030424 - axon [Evidence IDA]; GO:0016323 - basolateral plasma membrane [Evidence IDA]; GO:0030425 - dendrite [Evidence IDA]; GO:0005911 - intercellular junction [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IDA]; GO:0045202 - synapse [Evidence IDA]; GO:0008021 - synaptic vesicle [Evidence IDA] GO_function : GO:0030165 - PDZ domain binding [Evidence IPI]; GO:0005515 - protein binding [Evidence IPI]; GO:0008022 - protein C-terminus binding [Evidence IPI]; GO:0042803 - protein homodimerization activity [Evidence IDA]; GO:0005102 - receptor binding [Evidence IPI] GO_process : GO:0016338 - calcium-independent cell-cell adhesion [Evidence IDA]; GO:0007155 - cell adhesion [Evidence IDA]; GO:0008037 - cell recognition [Evidence IDA]; GO:0051606 - detection of stimulus [Evidence IDA]; GO:0007157 - heterophilic cell adhesion [Evidence IDA]; GO:0007156 - homophilic cell adhesion [Evidence IDA]; GO:0050715 - positive regulation of cytokine secretion [Evidence ISS]; GO:0042271 - susceptibility to natural killer cell mediated cytotoxicity [Evidence IDA]; GO:0007416 - synaptogenesis [Evidence IDA] codon_start : 1 note : isoform a is encoded by transcript variant 1; immunosuperfamily protein Bl2; immunoglobulin superfamily, member 4A product : immunoglobulin superfamily, member 4A isoform a protein_id : NP_997558.2

name	Cadm1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71040104 CCDS:CCDS23148.1 GeneID:54725 MGI:1889272
definition	GO_component : GO:0030424 - axon [Evidence IDA]; GO:0016323 - basolateral plasma membrane [Evidence IDA]; GO:0030425 - dendrite [Evidence IDA]; GO:0005911 - intercellular junction [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IDA]; GO:0045202 - synapse [Evidence IDA]; GO:0008021 - synaptic vesicle [Evidence IDA] GO_function : GO:0030165 - PDZ domain binding [Evidence IPI]; GO:0005515 - protein binding [Evidence IPI]; GO:0008022 - protein C-terminus binding [Evidence IPI]; GO:0042803 - protein homodimerization activity [Evidence IDA]; GO:0005102 - receptor binding [Evidence IPI] GO_process : GO:0016338 - calcium-independent cell-cell adhesion [Evidence IDA]; GO:0007155 - cell adhesion [Evidence IDA]; GO:0008037 - cell recognition [Evidence IDA]; GO:0051606 - detection of stimulus [Evidence IDA]; GO:0007157 - heterophilic cell adhesion [Evidence IDA]; GO:0007156 - homophilic cell adhesion [Evidence IDA]; GO:0050715 - positive regulation of cytokine secretion [Evidence ISS]; GO:0042271 - susceptibility to natural killer cell mediated cytotoxicity [Evidence IDA]; GO:0007416 - synaptogenesis [Evidence IDA] codon_start : 1 note : isoform c is encoded by transcript variant 3; immunosuperfamily protein Bl2; immunoglobulin superfamily, member 4A product : immunoglobulin superfamily, member 4A isoform c protein_id : NP_061240.3

name	Cadm1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:46575940 CCDS:CCDS23150.1 GeneID:54725 MGI:1889272
definition	GO_component : GO:0030424 - axon [Evidence IDA]; GO:0016323 - basolateral plasma membrane [Evidence IDA]; GO:0030425 - dendrite [Evidence IDA]; GO:0005911 - intercellular junction [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IDA]; GO:0045202 - synapse [Evidence IDA]; GO:0008021 - synaptic vesicle [Evidence IDA] GO_function : GO:0030165 - PDZ domain binding [Evidence IPI]; GO:0005515 - protein binding [Evidence IPI]; GO:0008022 - protein C-terminus binding [Evidence IPI]; GO:0042803 - protein homodimerization activity [Evidence IDA]; GO:0005102 - receptor binding [Evidence IPI] GO_process : GO:0016338 - calcium-independent cell-cell adhesion [Evidence IDA]; GO:0007155 - cell adhesion [Evidence IDA]; GO:0008037 - cell recognition [Evidence IDA]; GO:0051606 - detection of stimulus [Evidence IDA]; GO:0007157 - heterophilic cell adhesion [Evidence IDA]; GO:0007156 - homophilic cell adhesion [Evidence IDA]; GO:0050715 - positive regulation of cytokine secretion [Evidence ISS]; GO:0042271 - susceptibility to natural killer cell mediated cytotoxicity [Evidence IDA]; GO:0007416 - synaptogenesis [Evidence IDA] codon_start : 1 note : isoform b is encoded by transcript variant 2; immunosuperfamily protein Bl2; immunoglobulin superfamily, member 4A product : immunoglobulin superfamily, member 4A isoform b protein_id : NP_997559.1

name	Cadm1 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:71040107 CCDS:CCDS23147.1 GeneID:54725 MGI:1889272
definition	GO_component : GO:0030424 - axon [Evidence IDA]; GO:0016323 - basolateral plasma membrane [Evidence IDA]; GO:0030425 - dendrite [Evidence IDA]; GO:0005911 - intercellular junction [Evidence IDA]; GO:0016020 - membrane [Evidence IEA]; GO:0005886 - plasma membrane [Evidence IDA]; GO:0045202 - synapse [Evidence IDA]; GO:0008021 - synaptic vesicle [Evidence IDA] GO_function : GO:0030165 - PDZ domain binding [Evidence IPI]; GO:0005515 - protein binding [Evidence IPI]; GO:0008022 - protein C-terminus binding [Evidence IPI]; GO:0042803 - protein homodimerization activity [Evidence IDA]; GO:0005102 - receptor binding [Evidence IPI] GO_process : GO:0016338 - calcium-independent cell-cell adhesion [Evidence IDA]; GO:0007155 - cell adhesion [Evidence IDA]; GO:0008037 - cell recognition [Evidence IDA]; GO:0051606 - detection of stimulus [Evidence IDA]; GO:0007157 - heterophilic cell adhesion [Evidence IDA]; GO:0007156 - homophilic cell adhesion [Evidence IDA]; GO:0050715 - positive regulation of cytokine secretion [Evidence ISS]; GO:0042271 - susceptibility to natural killer cell mediated cytotoxicity [Evidence IDA]; GO:0007416 - synaptogenesis [Evidence IDA] codon_start : 1 note : isoform d is encoded by transcript variant 4; immunosuperfamily protein Bl2; immunoglobulin superfamily, member 4A product : immunoglobulin superfamily, member 4A isoform d protein_id : NP_001020771.1

name	4432416J03Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:21313426 CCDS:CCDS23151.1 GeneID:78252 MGI:1925502
definition	codon_start : 1 exception : mismatches in translation product : hypothetical protein LOC78252 protein_id : NP_084345.1

name	D930028F11Rik (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:70778978 CCDS:CCDS23152.1 GeneID:244853 MGI:1924792
definition	codon_start : 1 product : hypothetical protein LOC244853 protein_id : NP_766509.2

name	EG640268 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149259926 GeneID:640268 MGI:3646632
definition	codon_start : 1 product : similar to protein of unknown function protein_id : XP_001478813.1

name	EG434401 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:82930015 GeneID:434401 MGI:3646416
definition	codon_start : 1 product : similar to nuclear protein-NHP2-like protein protein_id : XP_486217.2

name	Rexo2 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27229283 CCDS:CCDS23154.1 GeneID:104444 MGI:1888981
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0005739 - mitochondrion [Evidence IDA] GO_function : GO:0008408 - 3'-5' exonuclease activity [Evidence ISS]; GO:0004527 - exonuclease activity [Evidence IEA] GO_process : GO:0006139 - nucleobase, nucleoside, nucleotide and nucleic acid metabolism [Evidence ISS] codon_start : 1 product : small fragment nuclease protein_id : NP_077195.2

name	Rbm7 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:27753952 CCDS:CCDS23155.1 GeneID:67010 MGI:1914260
definition	GO_function : GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0000166 - nucleotide binding [Evidence IEA]; GO:0003723 - RNA binding [Evidence IEA] GO_process : GO:0007126 - meiosis [Evidence IEA] codon_start : 1 product : RNA binding motif protein 7 protein_id : NP_659197.2

name	EG434402 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:149259957 GeneID:434402 MGI:3643566
definition	codon_start : 1 product : hypothetical protein LOC434402 protein_id : XP_001479998.1

name	Nnmt (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:6754866 CCDS:CCDS23157.1 GeneID:18113 MGI:1099443
definition	GO_function : GO:0008168 - methyltransferase activity [Evidence IEA]; GO:0008112 - nicotinamide N-methyltransferase activity [Evidence IEA]; GO:0016740 - transferase activity [Evidence IEA] codon_start : 1 product : nicotinamide N-methyltransferase protein_id : NP_035054.1

name	Zbtb16 (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:84794629 CCDS:CCDS23158.1 GeneID:235320 MGI:103222
definition	GO_component : GO:0005622 - intracellular [Evidence IEA]; GO:0016607 - nuclear speck [Evidence ISS]; GO:0005634 - nucleus [Evidence IDA] [Evidence ISS]; GO:0017053 - transcriptional repressor complex [Evidence ISS] GO_function : GO:0003677 - DNA binding [Evidence ISS]; GO:0046872 - metal ion binding [Evidence IEA]; GO:0003676 - nucleic acid binding [Evidence IEA]; GO:0005515 - protein binding [Evidence ISS] [Evidence IPI]; GO:0042803 - protein homodimerization activity [Evidence ISS]; GO:0016566 - specific transcriptional repressor activity [Evidence ISS]; GO:0008270 - zinc ion binding [Evidence IEA] GO_process : GO:0009952 - anterior/posterior pattern formation [Evidence IMP]; GO:0007417 - central nervous system development [Evidence IDA]; GO:0035116 - embryonic hindlimb morphogenesis [Evidence IMP]; GO:0030326 - embryonic limb morphogenesis [Evidence IMP]; GO:0009880 - embryonic pattern specification [Evidence IMP]; GO:0035136 - forelimb morphogenesis [Evidence IMP]; GO:0035110 - leg morphogenesis [Evidence IMP]; GO:0048133 - male germ-line stem cell division [Evidence IMP]; GO:0001823 - mesonephros development [Evidence IDA]; GO:0030099 - myeloid cell differentiation [Evidence ISS]; GO:0008285 - negative regulation of cell proliferation [Evidence IMP]; GO:0045638 - negative regulation of myeloid cell differentiation [Evidence IDA]; GO:0045892 - negative regulation of transcription, DNA-dependent [Evidence ISS]; GO:0043065 - positive regulation of apoptosis [Evidence IMP]; GO:0045449 - regulation of transcription [Evidence IMP]; GO:0001501 - skeletal development [Evidence IMP] codon_start : 1 note : luxoid; Green's luxoid; zinc finger protein 145 product : zinc finger and BTB domain containing 16 protein_id : NP_001028496.1

name	Htr3a (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:7305175 GeneID:15561 MGI:96282
definition	GO_component : GO:0016020 - membrane [Evidence IEA]; GO:0045211 - postsynaptic membrane [Evidence IEA] GO_function : GO:0005230 - extracellular ligand-gated ion channel activity [Evidence IEA]; GO:0005216 - ion channel activity [Evidence IEA]; GO:0030594 - neurotransmitter receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0006810 - transport [Evidence IEA] codon_start : 1 exception : unclassified translation discrepancy note : 5HT3 serotonin receptor product : 5-hydroxytryptamine (serotonin) receptor 3A protein_id : NP_038589.1

name	Htr3b (CDS detail)
type	CDS
link	vega ensembl MGI NCBI
xref	GI:9938026 CCDS:CCDS23160.1 GeneID:57014 MGI:1861899
definition	GO_component : GO:0005887 - integral to plasma membrane [Evidence IDA]; GO:0045211 - postsynaptic membrane [Evidence IEA] GO_function : GO:0030594 - neurotransmitter receptor activity [Evidence IEA]; GO:0004872 - receptor activity [Evidence IEA]; GO:0004993 - serotonin receptor activity [Evidence ISS] [Evidence IDA]; GO:0005232 - serotonin-activated cation-selective channel activity [Evidence ISS] [Evidence IDA] GO_process : GO:0006811 - ion transport [Evidence IEA]; GO:0007210 - serotonin receptor signaling pathway [Evidence ISS] [Evidence IDA] codon_start : 1 note : 5-HT3 receptor subunit B product : 5-hydroxytryptamine (serotonin) receptor 3B precursor protein_id : NP_064670.1

name	LOC100043303 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:100043303
definition	number : 1 pseudo : _no_value

name	LOC667933 (CDS detail)
type	exon
link	vega ensembl
xref	GeneID:667933
definition	number : 1 pseudo : _no_value

clone name	MSMg01-535C12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-079O16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-308F03
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-345D24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-120L05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-053K13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-079N20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-053E11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-050K08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-404D22
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-515F16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-373A02
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-456C13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-172M09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-081B14
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-265K19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-111I06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-489J12
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-263A18
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-322I10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-141M07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-421M02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-345N05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-328D07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-145N16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-209D13
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-056M17
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-145F08
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-231H07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-301F09
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-186E14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-134L10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-521E14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-422L11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-364K20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-444B06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-181K16
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-502F21
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-416J19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-393C24
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-488O13
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-167B11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-427A23
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-360N01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-438A09
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-453N24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-114E19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-542I10
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-092P18
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-430C08
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-429M16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-422P16
singlet/doublet	doublet
plural/unique	plural

clone name	MSMg01-455B24
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-213P05
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-140N21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-430N06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-460I02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-472M01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-460K02
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-501O16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-170N21
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-416D11
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-438P06
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-438P07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-355E06
singlet/doublet	singlet
plural/unique	plural

clone name	MSMg01-523B24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-535M19
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-357B20
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-357B22
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-398J16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-477H10
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-073E07
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-534L11
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-235G15
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-513D19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-488M20
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-173H17
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-325B05
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-413I14
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-101N24
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-330H19
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-413K01
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-426N07
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-115P03
singlet/doublet	doublet
plural/unique	unique

clone name	MSMg01-134A16
singlet/doublet	singlet
plural/unique	unique

clone name	MSMg01-356D13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225K08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-084M20
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-045J13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-059G12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-266M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-183L01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-030K21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-114F16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-326P01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-224F15
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-031E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-177E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-267E03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-119L19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-225G19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-009E16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-275E12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-101H19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-157F21
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-018F24
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-036L02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-056N14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128H01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-306L07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-150O13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-169M14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-128M05
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-067C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-076P16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-261O02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-178A08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-113A14
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-333O03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257P13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-292B02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-320P10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-024K06
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-200D19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-149E21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050F12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-153B22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-285I08
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-242M23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-248E23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-298M03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-136D12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-102N01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-087F03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-317L21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-194G19
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-239D24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-151C03
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-079P06
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-050O24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-105C23
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-115E13
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-115G01
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-271O23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-174E22
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-138N02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-257L01
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-152C10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-142H21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-116J23
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-004G08
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-131B22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-002C24
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-106G15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-289C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-203O07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-179H19
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-052P02
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-162G07
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-080N12
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-008F11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-332G10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-334D11
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-309P15
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-329G07
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-325C21
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-336J03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-211K09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-316D03
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-343K10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-234N10
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-262A17
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-219B04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-223F04
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-096P17
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-291O22
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-247A16
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-118B13
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-075F04
singlet/doublet	singlet
plural/unique	unique

clone name	B6Ng01-189M09
singlet/doublet	doublet
plural/unique	unique

clone name	B6Ng01-269H17
singlet/doublet	doublet
plural/unique	unique

BAC End Information

BAC end	BAC-end 1	BAC-end 2
end name	MSMg01-438A09.T7 (MSMg01no438_a09.b1)	MSMg01-438A09.TJ (MSMg01no438_a09.g1)
ACC	AG528715	AG528716
length	749	897
length of high quality (start - end)	489 (64 - 552)	---
definition	CHROMAT_FILE: MSMg01no438_a09.b1 PHD_FILE: MSMg01no438_a09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:37 2005	CHROMAT_FILE: MSMg01no438_a09.g1 PHD_FILE: MSMg01no438_a09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:03:37 2005
singlet/doublet	singlet	---
BLAST hit	unique	no hit data
sequence	XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCATA TGTTTCCCCCGCAGATCTTTCCTTCCTGTAACCCACACAAACCCTGTATC AGGTAATGGTGGCTCCAGTCTTTGGCCTAGCAGGTTATAATGCCTACAGT CAGGATGCAGTGCCTGATACCCAGTCCTTCGAGAAACCCTTTGCCTCTCC CCTAGATGTAGACCAAGGGTAGACCTGCTTCTTACCGCTTTTCCTGCTAT CCCCCAATTCAGACACACAGGCATCTAAAAATGACTCTTGGAACCCTCAC ATTTGTTTTTCAAAGCTGTTCCCATACAAATCCTGTCCAGATAGAACTTG GCTTCTCATTTCACTCATGATAGAAGCTGATGTCCTGACTTGTTGGGCTG CTCTGACGCTGCCCCCCTCTCTCCTCTTCCTCCCTTCCTGCCCCACCCCA ACCCACCTCCCCGTCTCCTGAGAAAGGGGCCCATCTCACTTCTCTCTTGC CCCACATTCCTCAAAGGCCTCTCTCATACTTGTAGGATTCAAAGATCATA TGTTCATGGACACTTTTATAGCTACCCAGTCCAAAATTGCAGGCCCACTT ACACATACATACCACCTATCTCCTGCCTTGTTTTTGTTTTCTGGAATAGT GCCTTGTGCCATATGACACTGTATCTGAAGTCGTGAATCAGGCTGAGAGC TCAGGGATAGACCACTTACCTAGCAACCATGTGCCTTTGTTTTGATGTN	GAGGGTATTTTNAATAACCCATGTCTTTCTGCATGTACGAAATTGTGAGC CTTCCGGTGGATCCCAAAAGAGATTCTTTTTTTTTTTTAACCAGGCCCGG GTCTGTCGCTGTTTACACGAAGTACATAATAACGGGGCGCATTAAGTGGT ACCGACATTTGTATATTCTGAGTGTTCTGTTAGCAAGGACCCCCGGCACG ACGCAACGCTACAACAAGCCCTACGTTAAATCAACCAACTATCCGTCTCT TCTTTTTGCTTATGTATATATTATTCCCTTCGATTATCATTACTTCTATA TATGTTCGCCCCCTGCTGGCGCATACTCGTCGCTCGCTTATTACCGTCAC CGCCGTTCGCGCCACTTTCTCGCGTCCTGTATACAAGCAACAAATAAAAT TAAATCATACAGACAGTAGACCAAAGAATAGTATAACGGGTGGAGTGCTG TTGTTTTCGCAAGGGCGTGAACTAGAGGAGAGGGGTCTGGTTCCACCGTA GTTCAGCCTCAGAGCCGACCCCCGCGCTGTCCGCAGGGGGTCTGGAGTCT TACCCTTTTTATCTCTTCCCTACGTAATTGGTGTTCGGGGTCCCCACTGA GTATTTAAAAGCACAGTAGTCCTTTTACCCCGTTTTGTACTATCTCACGC GCAGGTCGTCGCCACGAAATGTACGCACTGGAAGTCGTAGTGGTTTTACA CTGTTTGGACGTGTCCCTATCGTGGGTTACGTTCCGCGCTTTTATTTCCC AATCTGCATTGTTTATCATACTAACATCGTCCACTCTTCGTATTCGTACT CGCCCTCAACTAAATGACAGTCAAAAGCTATATTGACTACGAAGGAAAGA CACAATTAAGGCGTCTCAGTTTCGGTGTGCCTTTCTGTTCTTTGTGN
quality values	Open. Hide. 9 9 19 19 27 25 25 32 23 15 8 8 8 21 21 41 30 30 31 30 27 21 21 9 9 9 9 9 9 9 11 11 10 10 19 17 21 19 31 41 41 41 47 41 41 33 33 33 33 33 30 21 7 7 6 6 6 7 12 12 13 13 11 18 17 32 37 37 59 59 59 59 59 59 59 59 59 59 59 59 59 57 53 53 53 53 53 57 57 57 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 46 46 43 43 43 43 43 48 37 37 37 44 57 57 57 57 57 68 68 68 68 68 68 68 68 68 68 68 68 68 68 51 51 68 68 68 68 68 68 68 68 68 68 68 68 50 50 50 50 50 50 43 43 59 59 57 68 50 50 50 50 50 50 57 57 59 59 59 68 68 68 68 68 68 68 68 51 51 50 68 50 57 68 68 68 68 68 68 68 68 68 68 68 68 59 57 57 57 57 57 57 57 57 57 68 57 57 68 57 57 59 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 59 59 57 57 57 59 59 68 68 57 57 57 57 57 57 59 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 68 57 57 57 54 68 68 68 68 68 68 68 68 59 59 59 53 53 53 53 53 53 57 57 57 59 59 59 59 59 59 59 59 59 50 50 41 27 12 11 12 12 10 10 10 10 10 10 18 25 25 37 37 39 41 44 59 59 59 59 59 57 57 57 57 57 57 59 59 59 59 59 59 59 59 68 68 59 59 59 57 57 57 57 57 57 68 57 57 46 46 43 43 43 48 59 59 59 59 57 68 68 68 68 68 68 59 59 59 59 59 59 68 68 68 68 68 68 68 68 68 68 68 59 59 59 68 68 68 68 68 68 68 68 59 59 59 59 59 68 59 59 59 59 59 59 59 68 68 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 59 48 48 48 48 48 50 50 47 47 41 41 41 37 37 41 41 41 41 47 47 47 48 48 48 48 57 57 59 59 59 59 48 48 41 47 47 47 37 37 37 32 32 37 44 44 41 42 42 42 48 48 59 59 59 59 59 59 59 59 41 37 37 41 41 44 47 47 59 59 59 37 37 32 29 29 32 30 29 26 26 32 43 47 41 41 41 41 43 41 37 28 28 13 13 28 20 16 18 18 18 18 24 32 36 39 37 37 26 23 10 10 10 10 10 10 10 18 19 16 17 17 18 28 25 37 37 35 37 39 41 41 36 34 28 25 22 24 21 27 28 30 23 24 22 23 30 30 47 47 37 37 32 29 31 29 30 31 35 28 30 30 30 20 20 23 34 28 28 23 23 28 34 24 17 18 16 16 21 28 59 32 31 35 32 32 37 31 25 24 20 21 18 18 22 22 23 17 13 10 10 10 13 17 18 10 11 9 12 10 10 10 10 10 10 16 22 23 19 15 11 9 9 9 12 12 14 13 13 13 17 15 9 9 10 14 17 18 28 24 16 12 11 11 17 19 31 34 34 30 26 15 11 9 11 11 19 11 11 11 10 10 10 10 9 9 10 9 10 10 9 10 12 17 14 18 15 23 21 20 20 16 16 13 13 13 17 16 21 22 10 8 6 6 6 10 10 20 15 17 9 8 8 9 9 10 15 11 11 3 0	Open. Hide. 6 6 8 8 8 8 8 8 8 8 3 0 3 6 6 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 10 6 6 8 8 8 8 9 8 8 8 8 10 8 8 8 8 8 8 10 10 10 10 10 9 9 10 9 9 9 9 9 12 12 13 15 12 11 11 11 11 11 8 8 8 8 8 8 10 8 10 12 10 8 6 6 8 8 8 8 11 11 12 12 12 11 16 15 11 11 9 10 11 11 11 10 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 7 7 7 6 8 8 8 8 8 8 8 10 8 8 8 8 8 8 8 9 9 11 11 10 10 10 10 9 8 8 8 8 8 8 8 8 8 8 8 8 9 9 10 10 10 11 9 12 8 8 8 8 8 8 10 8 8 6 6 8 8 6 6 8 8 9 9 10 10 11 13 17 18 11 11 12 8 8 6 6 8 8 8 9 8 8 8 12 12 8 8 6 7 8 8 8 8 6 6 8 8 10 10 10 9 9 11 11 11 11 11 13 8 8 8 8 8 9 9 8 10 8 8 6 6 8 8 8 8 9 8 10 10 8 8 8 10 8 8 8 8 8 8 10 8 8 8 10 9 9 9 9 9 9 10 10 10 10 11 8 8 6 6 8 8 8 8 8 8 13 10 10 10 9 8 8 8 8 8 8 8 8 8 8 10 8 8 8 11 9 8 8 10 10 8 10 8 8 8 8 10 10 8 8 9 8 12 12 12 8 8 8 8 8 8 10 8 8 8 8 6 6 8 8 8 8 10 9 9 9 9 8 8 8 8 10 10 10 10 10 9 12 10 9 9 9 10 9 9 10 12 10 8 8 8 9 9 10 10 13 14 12 11 19 9 8 8 8 8 8 10 10 10 9 9 8 8 8 9 9 10 15 15 15 15 10 9 8 8 8 10 10 8 8 8 10 12 10 13 8 8 8 8 8 8 10 10 8 8 6 6 6 6 8 8 8 8 9 8 8 8 6 6 8 8 8 8 6 6 8 8 6 6 6 8 8 9 9 9 9 10 10 10 10 10 10 10 8 8 8 8 8 10 8 8 10 10 9 11 10 10 10 10 10 10 10 8 8 8 8 8 8 8 8 8 8 8 9 10 10 10 11 10 8 8 8 8 8 8 8 10 10 10 8 8 8 8 8 8 9 10 10 8 8 8 8 8 8 8 8 8 8 8 8 8 8 8 11 11 9 9 10 9 9 9 9 8 8 8 8 8 8 10 10 8 8 8 8 8 8 8 9 10 12 10 10 9 10 9 9 10 9 9 8 8 10 9 9 9 11 11 15 15 15 12 10 10 10 10 8 6 6 6 8 8 9 8 8 8 6 6 8 8 8 8 10 8 8 8 8 8 8 8 15 10 8 8 8 8 8 8 8 10 8 10 8 8 8 10 10 10 8 8 8 8 10 8 8 8 8 8 8 8 8 8 8 10 8 9 8 10 12 10 8 8 7 6 8 8 8 8 8 8 10 8 8 6 6 8 8 9 10 10 10 12 12 11 13 11 9 8 8 8 8 8 8 8 8 8 7 7 8 8 10 13 17 12 9 9 9 8 8 8 7 12 10 10 8 8 8 8 6 6 8 8 8 8 8 8 8 8 8 13 8 8 7 7 10 8 8 8 8 8 9 11 10 8 8 8 8 10 8 8 9 9 13 10 8 8 8 8 8 8 6 6 10 6 8 8 9 8 8 8 6 6 6 6 8 8 8 10 10 11 10 8 8 8 6 6 8 8 8 8 8 8 11 11 11 11 11 8 8 6 6 8 6 6 8 8 8 8 8 8 9 9 9 10 14 16 16 10 10 8 10 8 8 8 8 8 8 6 6 6 8 8 12 12 13 8 8 8 10 10 8 11 12 8 8 7 6 8 8 8 8 8 8 8 8 8 8 9 9 8 8 10 10 8 8 8 8 8 8 12 10 8 8 8 8 8 9 10 9 9 9 9 9 9 3 0

Alignment Information

BAC End 1

BAC End 2

Query= MSMg01no438_a09.b1 MSMg01no438_a09.b1 CHROMAT_FILE:
MSMg01no438_a09.b1 PHD_FILE: MSMg01no438_a09.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:03:37 2005
         (489 letters)



>mm_chr9_47787298_47788186
          Length = 889

 Score =  922 bits (477), Expect = 0.0
 Identities = 483/485 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   gatctttccttcctgtaacccacacaaaccctgtatcaggtaatggtggctccagtcttt 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 gatctttccttcctgtaacccacacaaaccctgtatcaggtaatggtggctccagtcttt 426

                                                                       
Query: 61  ggcctagcaggttataatgcctacagtcaggatgcagtgcctgatacccagtccttcgag 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 425 ggcctagcaggttataatgcctacagtcaggatgcagtgcctgatacccagtccttcgag 366

                                                                       
Query: 121 aaaccctttgcctctcccctagatgtagaccaagggtagacctgcttcttaccgcttttc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 365 aaaccctttgcctctcccctagatgtagaccaagggtagacctgcttcttaccgcttttc 306

                                                                       
Query: 181 ctgctatcccccaattcagacacacaggcatctaaaaatgactcttggaaccctcacatt 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 305 ctgctatcccccaattcagacacacaggcatctaaaaatgactcttggaaccctcacatt 246

                                                                       
Query: 241 tgtttttcaaagctgttcccatacaaatcctgtccagatagaacttggcttctcatttca 300
           |||||||||||||||  |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 245 tgtttttcaaagctgcacccatacaaatcctgtccagatagaacttggcttctcatttca 186

                                                                       
Query: 301 ctcatgatagaagctgatgtcctgacttgttgggctgctctgacgctgcccccctctctc 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 185 ctcatgatagaagctgatgtcctgacttgttgggctgctctgacgctgcccccctctctc 126

                                                                       
Query: 361 ctcttcctcccttcctgccccaccccaacccacctccccgtctcctgagaaaggggccca 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 125 ctcttcctcccttcctgccccaccccaacccacctccccgtctcctgagaaaggggccca 66

                                                                       
Query: 421 tctcacttctctcttgccccacattcctcaaaggcctctctcatacttgtaggattcaaa 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65  tctcacttctctcttgccccacattcctcaaaggcctctctcatacttgtaggattcaaa 6

                
Query: 481 gatca 485
           |||||
Sbjct: 5   gatca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 25
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 489
Length of database: 889
Length adjustment: 10
Effective length of query: 479
Effective length of database: 879
Effective search space:   421041
Effective search space used:   421041
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

BAC Information

Search Parameter

Search Result

BAC

BAC End Information

Alignment Information