Query= MSMg01no440_j16.b1 MSMg01no440_j16.b1 CHROMAT_FILE:
MSMg01no440_j16.b1 PHD_FILE: MSMg01no440_j16.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:07 2005
(514 letters)
>mm_chr9_16387594_16388508
Length = 915
Score = 899 bits (465), Expect = 0.0
Identities = 500/515 (97%), Gaps = 7/515 (1%)
Strand = Plus / Plus
Query: 4 ggaattctctaatcttcca----ttctgtgcgtggctctgctactgggcacagcttcagt 59
||||||||||||||| | |||||||||||||||||||||||||||||||||||||
Sbjct: 204 ggaattctctaatct---aaaaattctgtgcgtggctctgctactgggcacagcttcagt 260
Query: 60 tgcagagctggaaggaagatgggggtggaagatgaacatatccattgggaaataacagca 119
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 261 tgcagagctggaaggaagatgggggtagaagatgaacatatccattgggaaataacagca 320
Query: 120 ggaacacagagtatgcagggactgtcaagtttagggcatggatggcctttgcacattagg 179
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggaacacagagtatgtagggactgtcaagtttagggcatggatggcctttgcacattagg 380
Query: 180 caagtctccctggacaatggcagctgttgcttacataaatcatcaagatatacaacgcca 239
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caagtctccctggacaatggcagctgttgcttacataaatcatcaagatatacaacgcca 440
Query: 240 gattcccctccctacaagtctacacacatcctctttcagctccttcctttgaaatgaaat 299
||||||| |||||||| ||| ||||||||||||||||||||||||||||||||||||| |
Sbjct: 441 gattcccgtccctacacgtcaacacacatcctctttcagctccttcctttgaaatgaagt 500
Query: 300 acttcatgttgaatcagagctatgacagtacttttatctgcgaccttggagacgatgcca 359
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 501 acttcatgttgaatcagagctatgacagtacttttatctgcgaccttggagacaatgcca 560
Query: 360 aatgtagcctctatatgcttatccctaaaacgggtaggtaagcatttactgcctatatgg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 561 aatgtagcctctatatgcttatccctaaaacgggtaggtaagcatttactgcctatatgg 620
Query: 420 gttctcatttcagtaattaatctgaatgccacatgaagcttaatacacatacaggccaca 479
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 621 gttctcatttcagtaattaatctgaatgccacatgaagcttaatatacatacaggccaca 680
Query: 480 tacagtttcctataaattaaagcaaggtttctgtt 514
|||||||||||||||||||||||||||||||||||
Sbjct: 681 tacagtttcctataaattaaagcaaggtttctgtt 715
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 514
Length of database: 915
Length adjustment: 10
Effective length of query: 504
Effective length of database: 905
Effective search space: 456120
Effective search space used: 456120
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no440_j16.g1 MSMg01no440_j16.g1 CHROMAT_FILE:
MSMg01no440_j16.g1 PHD_FILE: MSMg01no440_j16.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:07 2005
(313 letters)
>mm_chr9_16563925_16564637
Length = 713
Score = 590 bits (305), Expect = e-173
Identities = 311/313 (99%)
Strand = Plus / Minus
Query: 1 tgcaaatacagacatgttataagagacttttatgcaaaattttaattttcaaatgtatat 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 478 tgcaaatacagacatgttataagagacttttatgcaaaattttaattttcaaatgtatat 419
Query: 61 atttaattaagtaaaaatatactaattactgactctaattactactcttcccaaaaattt 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 418 atttaattaagtaaaaatatactaattactgactctaattactactcttcccaaaaattt 359
Query: 121 taagataaattgaaaactgatttaatgcttgaagaagcactgaaaaactctgacaatttt 180
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 358 taagataaattgaaaactgacttaatgcttgaagaagcactgaaaaactctgacaatttt 299
Query: 181 cagggcagcaaaggaggacacaggaccaccaaacagaaaacatacaccagctgatacaag 240
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 298 cagggcagcaaaggaggacacaggaccaccaaacagaaaacatacaccagctgatataag 239
Query: 241 gcccccaacacacatacagtagaggacttacaggtctgtgttcattcagagatgatgcac 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 238 gcccccaacacacatacagtagaggacttacaggtctgtgttcattcagagatgatgcac 179
Query: 301 ctaatcctcaaga 313
|||||||||||||
Sbjct: 178 ctaatcctcaaga 166
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 313
Length of database: 713
Length adjustment: 9
Effective length of query: 304
Effective length of database: 704
Effective search space: 214016
Effective search space used: 214016
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
