Query= MSMg01no440_n17.b1 MSMg01no440_n17.b1 CHROMAT_FILE:
MSMg01no440_n17.b1 PHD_FILE: MSMg01no440_n17.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:27 2005
(450 letters)
>mm_chr9_32545185_32546034
Length = 850
Score = 847 bits (438), Expect = 0.0
Identities = 444/446 (99%)
Strand = Plus / Plus
Query: 5 gaattcttgaggtcccatcctcatgacagttccgaggagtagagccttactttggctact 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 205 gaattcttgaggtcccatcctcatgacagttccgaggagtagagccttactttggctact 264
Query: 65 atgctcagaactctaagccaggcagtggcagcagcactcatgttgtggccaggccagcat 124
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 atgctcagaactataagccaggcagtggcagcagcactcatgttgtggccaggccagcat 324
Query: 125 cctttcccctagtgtagactcaggacttctgggactcctgtatccctgggccctctctcc 184
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 325 cctttcccctagtgtagactcaggacttctgggactcctgtatccctgggccctctctcc 384
Query: 185 cttcctccctgtccagatctaattatcaatctgtcctccataagagggattttacagctg 244
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct: 385 cttcctccctgtccagatctaattagcaatctgtcctccataagagggattttacagctg 444
Query: 245 ttttttccccaacccctcttccctgccctcttcctacctcctcatttacctccaggtaaa 304
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 445 ttttttccccaacccctcttccctgccctcttcctacctcctcatttacctccaggtaaa 504
Query: 305 ctcgggggccaggactcttttgagagcgtagagagctacgatagttgtgaccgcctcacc 364
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 505 ctcgggggccaggactcttttgagagcgtagagagctacgatagttgtgaccgcctcacc 564
Query: 365 cagtcctggagcagccagtcatccttcaacagcctgcagcgggtcccctcctatgacagc 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 565 cagtcctggagcagccagtcatccttcaacagcctgcagcgggtcccctcctatgacagc 624
Query: 425 ttcgactacgaggattatcccgctgc 450
||||||||||||||||||||||||||
Sbjct: 625 ttcgactacgaggattatcccgctgc 650
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 450
Length of database: 850
Length adjustment: 10
Effective length of query: 440
Effective length of database: 840
Effective search space: 369600
Effective search space used: 369600
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no440_n17.g1 MSMg01no440_n17.g1 CHROMAT_FILE:
MSMg01no440_n17.g1 PHD_FILE: MSMg01no440_n17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:07:27 2005
(518 letters)
>mm_chr9_32705663_32706580
Length = 918
Score = 917 bits (474), Expect = 0.0
Identities = 508/520 (97%), Gaps = 4/520 (0%)
Strand = Plus / Minus
Query: 1 cctgttatgcacacgtctatgtccctctcaacttacatctcctaaatattcattttgcct 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 588 cctgttatgcacacgtctatgtccctctcaacttacatctcctaaatattcattttgcct 529
Query: 61 tacataggcagcacatatgcatgaatgaaaataaacacattgctcctacaaatagtttag 120
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 528 tacataggcagcacatctgcatgaatgaaaataaacacattgcgcctacaaatagtttag 469
Query: 121 tctcagaaaagtgattagataaacaaacaaaagaaaaataaatgtcccttctgagtgctt 180
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 468 tctcagaaaagtgattagataaacaaacaaaagaaaaataagtgtcccttctgagtgctt 409
Query: 181 acctatatcagctgtgcacttcaatgcaacgtgacagtaagtagcaaatgccacaatgtt 240
||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 408 acctacatcagctctgcacttcaatgcaacgtgacagtaagtagcaaatgccacaatgtt 349
Query: 241 tctgtcatctccagacagattcggcagaaaatgacgaca--gcacaggtgagcctgtaga 298
||||||||||||||||||||||||||||||||||||| | || || |||||||||||||
Sbjct: 348 tctgtcatctccagacagattcggcagaaaatgacgatagtgc-ca-gtgagcctgtaga 291
Query: 299 ggttttagactgtgtaaagacacaagaatgaagaggcatatgagacctagggggctgcag 358
||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||
Sbjct: 290 ggttttagactgtgtaaagacacaagaatgaggagacatatgagacctagggggctgcag 231
Query: 359 atgtttgtagtctataaaaacacatgttggagctgggtgtggtactgtaagcctttaaac 418
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 230 atgtttgtagtctataaaaacacatgttggagctgggtgtggtactgtaagcctttaaac 171
Query: 419 ccagcagaagcagaggcagatggatctctgtgacttcgatccattctggtctatagctca 478
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 170 ccagcagaagcagaggcagatggatctctgtgacttcgatccattctggtctatagctca 111
Query: 479 tctaaggccattcaatgatacatggtgaacccctgattaa 518
||||||||||||||||||||||||||||||||||||||||
Sbjct: 110 tctaaggccattcaatgatacatggtgaacccctgattaa 71
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 518
Length of database: 918
Length adjustment: 10
Effective length of query: 508
Effective length of database: 908
Effective search space: 461264
Effective search space used: 461264
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
