BAC Information

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BAC

Clone NameMSMg01-444L17
Chromosome9 (Build37)
Map Location 72,859,181 - 72,859,324
singlet/doubletsinglet
Overlap geneCcpg1
Upstream geneTcf12, EG666001, LOC665959, EG665964, LOC665970, Suhw4, LOC100041760, Mns1, LOC666007, Tex9, 4930509E16Rik, Rfxdc2, Nedd4, EG639396, Prtg, LOC100040694, Pygo1, Dyx1c1, EG546143, LOC100041896
Downstream genePigb, Rab27a, 2410004A20Rik, BC003885, EG436081, Unc13c
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444L17.T7 (MSMg01no444_l17.b1)MSMg01-444L17.TJ (MSMg01no444_l17.g1)
ACCAG533829AG533830
length672739
length of high quality
(start - end)
213 (331 - 543)144 (171 - 314)
definitionCHROMAT_FILE: MSMg01no444_l17.b1 PHD_FILE: MSMg01no444_l17.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:43 2005CHROMAT_FILE: MSMg01no444_l17.g1 PHD_FILE: MSMg01no444_l17.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:43 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
NTTATCCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXAATCAAGAACA
CGGCGCGGAATCTTTCCATTACTAACCCAAGTTTCTCTCTCCATTGGTAT
CTTCACCAAGTAACCCAAATTATCAGACGATTTAAGATTAATTCTTTTGT
TCCGTATGCTTTTTTTTAAAAGCTTTATTTATTTTTAATTTAGGGGTATG
AATAGTTTATTTGCATGTATGTATGTGTATGCCACACGCATGTATGGTGT
CTGTGTTTTTCAAAAGAGGGCATCAGATTCCCTGGAACTGGAGTTAAGGA
TAGTTGTGGACAACCATACATTTATTATTAGATCCTAGACCCTCTGCCAG
ATCAGGGAGTGCTCCTAACCATTGAGCCATCTCTCTACCCAGCTCCCCCA
TTCTGTATACTTTTTTTAAAACTGAAGATAGATTCTCCTCTCAAGTATAT
CCTGACCCTCCCTCTACTCCTCCCAGCTCCTCACAACCACCCTTCTCCCC
CAGATCCATTCCTGCTCCATTTCCCTTCAGAATAGAGCAAGCCTCTCAGA
GACACCAACCAAACAGGACATAATGAGATAAGGCAAGATAAGGCAAAATA
TTAAAAAACCCACGCACCCGGAATAGTCCCCGGGAGCACATAGAAAGAAG
CCGAATTATGTTGTTCCCCCCC
NCCGATGATAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXAACAAGAACAAGTAGGTAGAATTCCAT
GTGTGTCTAACTTTCTAAAGGCCAAGGACTGACTAGCAGACCCAAGTCCC
CAGAAGTCCATGCACAGTGCTGCAAACAGACACATCATCGGAATACACCC
ATTTCTAAGCTAGAAAAGTGAGGGAAGCCCTCCCATCTTGTTACCACAGT
AGCTGTCCTGAAAAGGTGCCTACACGGTTTAGAGAACATTTTATTCTATT
TATTTTTTATTTTCAGTATTTGGCCTCTCTATATCACGCTAGCTGACCTA
TCACTTATTCTGTAGACCAGGTTGACCTCAAACTCAGATCTGCTTGCCTC
TATCCCACCACACCCAGCAACTAAGAGATTTTAAAGTAAGTTGCATTGCC
TTCTGTAAGTAACCCACAATCAGCTATTTGTATATCTGTATCCTCATGTC
CCCAGACTCAGTACTGATGAGGATAAAAAAATATTCAGAGAGCAGCATGG
CGTGGCAGTACCCACCTTTAATCCCAGCACTAGGGTGTCAGACAAGGCTG
CTGTGCGTCAGCACAGAATCTCATGGAAACATCTCTGTACACAGAGGACA
GCCTGAATCCTTTACATAGTTAAGTACTTTCCCAAACCCAAGTAAATTTG
AATTCCGAAACCAACAATCAAATTAGGTAATAAGAGTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_l17.g1 MSMg01no444_l17.g1 CHROMAT_FILE:
MSMg01no444_l17.g1 PHD_FILE: MSMg01no444_l17.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:43 2005
         (144 letters)



>mm_chr9_72858981_72859524
          Length = 544

 Score =  271 bits (140), Expect = 1e-77
 Identities = 143/144 (99%)
 Strand = Plus / Minus

                                                                       
Query: 1   tgcaaacagacacatcatcggaatacacccatttctaagctagaaaagtgagggaagccc 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 344 tgcaaacagacacatcatcggaatacacccatttctaagctagaaaagtgagggaagccc 285

                                                                       
Query: 61  tcccatcttgttaccacagtagctgtcctgaaaaggtgcctacacggtttagagaacatt 120
           |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 284 tcccatcttgttaccacaatagctgtcctgaaaaggtgcctacacggtttagagaacatt 225

                                   
Query: 121 ttattctatttattttttattttc 144
           ||||||||||||||||||||||||
Sbjct: 224 ttattctatttattttttattttc 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 7
Number of extensions: 2
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 144
Length of database: 544
Length adjustment: 8
Effective length of query: 136
Effective length of database: 536
Effective search space:    72896
Effective search space used:    72896
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)