BAC Information

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BAC

Clone NameMSMg01-444O09
Chromosome9 (Build37)
Map Location 27,885,277 - 27,885,464
singlet/doubletsinglet
Overlap geneOpcml
Upstream geneNcapd3, Jam3, Igsf9b, Spata19, LOC666440, LOC100041202
Downstream geneHnt, LOC625222
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444O09.T7 (MSMg01no444_o09.b1)MSMg01-444O09.TJ (MSMg01no444_o09.g1)
ACCAG533956AG533957
length929728
length of high quality
(start - end)
---189 (126 - 314)
definitionCHROMAT_FILE: MSMg01no444_o09.b1 PHD_FILE: MSMg01no444_o09.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:56 2005CHROMAT_FILE: MSMg01no444_o09.g1 PHD_FILE: MSMg01no444_o09.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:12:56 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
ACATCAACTTGCGCGCGCCTAAAGAGNCAATATCCATTCTAAAACACGCG
AGANANGAAATATTTTTCCTCCAAAAGGGGCAAAGAGAGCGCGCAAACGT
ATACTAACTCCCCCTAAAACCTTCCATACCTTTACAGATATGAACCCGGT
ATCTGATCCTCTGCGTCTCATTCTCTAACGACAACTCGACTGTACCAGCA
CCTACTAGGATCTGTGGCACAGCATCTGACAAGTATCACCTTTTACCTGC
TAATCTTATTCCTTTTACACGCTTTCTTTTTTTTACTACCACACCATTCC
TAACTATGATTACTCTGCCCTCCCACTCCTTTCCGCATAACTTCATGTCC
CTGTTCCGTTCTCTTTTATTCGAGGACATGATTCCGAGTTAACTAAATAC
GCCATTTAACCCTTCCCCCTGCCTCTGTATTACGTATAATTCCGCTCCGC
CATATGTCCATTTGCCTCACCTCCCCTTTCTTCCCATCTCCTTTTTCTTC
CTTTCTCGCATATGTACCCTATTCCCTTTCCCTATTCCCCTTCTATTAAT
ACGTACCCCTCCCCCCCATTTTGTTGGACAGGCTCCCCTCATCCCCTTTT
TCTCACCCACCTTTTTTTTTTCTTATTTTGTCCCATTTTTTCTACGCTCT
CTCGCTCATTTCCCACGTTTACTTTGCCTCTTTTTCCCCCCTTTTTTCCC
CCTTTTGTTCGTTTATACGTAACTCTTTTCCGTTACCTTTCTCTCCATCT
TTGTCACTCTGACTTGTTATCTACTTATATTTTCAACGCTTTTGCGCCGT
CAACCCTTTTCCGGCTTAACCGTAATTAAATTTCAGTAACCAAACACTCA
TATACTACGTCTTATTCCCTTTATAACCTCGAGCCTCATTATACTCCCGC
CCATTTTTTCCCGCACCCGCCGCTCCTCC
TTTCACAATGAAGTGGGAGGCCTGGNGGNCGCCTGATCATAAAACTGGAG
GNGACCTATAGAATGTCAAAAAACAATCAGATTCTCATGCTTACACGGGA
AGCACATTTACCCACTGTGTCCCCTCTCTAACCCAGAAGATAGATTTCTT
TGGCTTGTAGTTCTGAAGACTGGGAAGTTCAAGATCACATGACTGTCTGG
TGAGATCCTGCCCACCAGTAAGGGCTCTAGATACTTAGGACATCACATGT
TGTAGAGGACACATACAGGGGAATAAGCTACTCTGGCTTTTATAACTGAC
ATTCTTGAGTCACCTTTGGTTATTTATAGACTAGNCAGNCATCCTTGGAG
TAGCGGTTCTATGACCTCCTCACCTTTGCCCATTCTCAACAGGGATTACA
TTACAGCATGGGTTTGGGCAGGAGACATTCCAAGCAAGAGTCTGAGGAGA
CACAGGAAGCATGAAAAAGAATAGTTACAGACTGGAACAGTCCATTATAG
AAGTGCCATGCAATGCAGATGGCTTGGCTAGGCTAATACCATAAGTGATA
TGGCCAGCCATCACGGTTCACTTCCTGGCACAGCTGTTGAGAGAAGAGAT
GGCATGCATGCTTCGTGGTAGAGAATTATGTAAAGCAATATGCACTCGTT
TTTTTTTCTGACACCCATAGCAAAGGAGTACACAATTCAACGTGGGTCCT
GGGATGCAGCATTTGATGACGTCTCATG
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_o09.g1 MSMg01no444_o09.g1 CHROMAT_FILE:
MSMg01no444_o09.g1 PHD_FILE: MSMg01no444_o09.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:12:56 2005
         (189 letters)



>mm_chr9_27884989_27885576
          Length = 588

 Score =  350 bits (181), Expect = e-101
 Identities = 187/189 (98%), Gaps = 1/189 (0%)
 Strand = Plus / Minus

                                                                       
Query: 1   ctctaacccagaagatagatttctttggcttgtagttctgaagactgggaagttcaagat 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 476 ctctaacccagaagatagatttctttggcttgtagttctgaagactgggaagttcaagat 417

                                                                       
Query: 61  cacatgactgtctggtgagatcctgcccaccagtaagggctctagatacttaggacatca 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 416 cacatgactgtctggtgagatcctgcccaccagtaagggctctagatacttaggacatca 357

                                                                       
Query: 121 catgttgtagaggacacatacaggggaataagctactctggcttttataactgacattct 180
           |||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 356 catgctg-agaggacacatacaggggaataagctactctggcttttataactgacattct 298

                    
Query: 181 tgagtcacc 189
           |||||||||
Sbjct: 297 tgagtcacc 289


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 9
Number of extensions: 3
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 189
Length of database: 588
Length adjustment: 8
Effective length of query: 181
Effective length of database: 580
Effective search space:   104980
Effective search space used:   104980
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)