BAC Information

Click to search

BAC

Clone NameMSMg01-444P04
Chromosome9 (Build37)
Map Location 33,589,492 - 33,589,761
singlet/doubletsinglet
Overlap genenone
Upstream geneLOC100041426, LOC100042343
Downstream geneKirrel3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-444P04.T7 (MSMg01no444_p04.b1)MSMg01-444P04.TJ (MSMg01no444_p04.g1)
ACCAG533994AG533995
length784724
length of high quality
(start - end)
270 (48 - 317)467 (87 - 553)
definitionCHROMAT_FILE: MSMg01no444_p04.b1 PHD_FILE: MSMg01no444_p04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:00 2005CHROMAT_FILE: MSMg01no444_p04.g1 PHD_FILE: MSMg01no444_p04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:00 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
AAATTTGAGTGCGCTATACTACTCACTATAGTTTGAGGATCCGCGTAATT
CTCATAAGGCTTACCACGCAGTACTTTTGTTTCTTTTATTTTCTTTAAAA
ACGAATCTATGAAAAGTTACCTGGGGAAAAAATACTTATTTTCCGCGCTG
ATTTGTTGCATAAATGGGCGGTGGCACACATAGGCATTGTGCTTAGAACT
GAAACAAAGCTGAGGTATCATGCATGCCCTGGTCCAGGACTACCTTCCTC
TGCGGAGAGGACTGCTGTAGGACGAAAACACCCAAGATTTCCTCCAGAGC
CTGCATTTCCTTGTTAGTCCATGCCCAAGCATCGCGCAACTCCAATCCCT
TACATTATAGATACAAATTGTTTTGGCTGAGCTGCAGTATCCTTATCCTA
TTCGCACCTTTCTCAATCGACCATCCCGCGTAGAGTGTCTTTATGATCCA
TACACTTGTTCTACACTCTTAGCGTTTTTTTGCCCTTCCGATATACTTCT
GTATACTATTTTTGCCATCTACATGCACACGTTGTTAACTATTCTACCTT
CTCACCCCCCTGAATATTTTCCCCCTCTTCTACCACTTTATATTTCCTCC
TGAACTTTAACGCTTTTACCATTTTTATGGCCCCCTCCTCTCTCTTTTTT
TCTTTCTCCCCCCTCTTTACCACTTTTTTAACTACACCCACCTTCTTCCC
CTTTTTTCCCCCTTTTCACCCCCCTACGTCACGTACCTTCCCTTTTTTCT
CCTACTTACTACGCCCATGCATTACCTCATTTTT
NAAATTAATCCTATGAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXTCACCTGAGGAATA
CCGAATGGCAGAGAAGCACTTGAAAAAATGTTCAACATCCTTAATCATCA
GGGAAATGCAAATCAAAACAACCCTGAGATTCCACCTCACACCAGTCAGA
ATGGCTAAGATCAAAAATTCAGGTGACAGCAGATGCTGGCGAGGATGTGG
AGAAAGAGGAACACTCCTCCATTGTTGGTGGGAGTGCAGGCTTGTACAAC
CACTCTGGAAATCAGTCTGGCGGTTCCTCAGAAAACTGGACATAGTACTA
CCGGAGGATCCAGCAATACCTCTCCTGGGCATATATCCAGAAGATGCCCC
AACAGGTAAGAAGGACACATGCTCCACTATGTTCATAGCAGCCTTATTTA
TAATAGCCAGAAGCTGGAAAGAACCTAGATGCCCCTCAACAGAGGAATGG
ATACAGAAAATGTGGTACATCTACACAATGGAGTACTACTCAGCTATTAA
AAAGAATGAATTTATGAAATTCCTAGCCAAATGGATGGGACTGGAGGGCA
TCCTCCTGAGTGAGGTAACACTTTCACAAAGAAACTCACACCATATGGAT
TCACTGATAAGTGGATATTAGCCCCCCCCCAGGATACCCTAGATATAATA
TATAACTTGGTTAATCCCCTGAAC
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no444_p04.b1 MSMg01no444_p04.b1 CHROMAT_FILE:
MSMg01no444_p04.b1 PHD_FILE: MSMg01no444_p04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:00 2005
         (270 letters)



>mm_chr9_33589292_33589961
          Length = 670

 Score =  484 bits (250), Expect = e-141
 Identities = 265/270 (98%)
 Strand = Plus / Minus

                                                                       
Query: 1   attctcataaggcttaccacgcagtacttttgtttcttttattttctttaaaaacgaatc 60
           ||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 470 attctcataaggcataacacgcagtacttttgtttcttttattttctttaaaaacgaatc 411

                                                                       
Query: 61  tatgaaaagttacctggggaaaaaatacttattttccgcgctgatttgttgcataaatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 410 tatgaaaagttacctggggaaaaaatacttattttccgcgctgatttgttgcataaatgg 351

                                                                       
Query: 121 gcggtggcacacataggcattgtgcttagaactgaaacaaagctgaggtatcatgcatgc 180
           | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 350 gtggtggcacacataggcattgtgcttagaactgaaacaaagctgaggtatcatgcatgc 291

                                                                       
Query: 181 cctggtccaggactaccttcctctgcggagaggactgctgtaggacgaaaacacccaaga 240
           ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||
Sbjct: 290 cctggtccaggactaccttcctctgtggagaggactgctgtaggatgaaaacacccaaga 231

                                         
Query: 241 tttcctccagagcctgcatttccttgttag 270
           ||||||||||||||||||||||||||||||
Sbjct: 230 tttcctccagagcctgcatttccttgttag 201


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 270
Length of database: 670
Length adjustment: 9
Effective length of query: 261
Effective length of database: 661
Effective search space:   172521
Effective search space used:   172521
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)