Query= MSMg01no445_i22.b1 MSMg01no445_i22.b1 CHROMAT_FILE:
MSMg01no445_i22.b1 PHD_FILE: MSMg01no445_i22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:48 2005
(244 letters)
>mm_chr9_28087101_28087744
Length = 644
Score = 464 bits (240), Expect = e-135
Identities = 243/244 (99%), Gaps = 1/244 (0%)
Strand = Plus / Plus
Query: 1 ctattcaaagggaaaaaaaacccttacagcaggcctcacaagggcagtaatttctgtttg 60
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 202 ctattcaaaggg-aaaaaaacccttacagcaggcctcacaagggcagtaatttctgtttg 260
Query: 61 tgtcccccacggttgtatccatggtgctcagcttgctacatggcaggctttcaataaata 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgtcccccacggttgtatccatggtgctcagcttgctacatggcaggctttcaataaata 320
Query: 121 ttatatctaaatatcaatgtttattgaagccatgaaacctaagtcaatggaaaactttgt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ttatatctaaatatcaatgtttattgaagccatgaaacctaagtcaatggaaaactttgt 380
Query: 181 ctgttattgagtctttgtaagatgagacctagtgtttaaaagcactgagctcttctgcaa 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 ctgttattgagtctttgtaagatgagacctagtgtttaaaagcactgagctcttctgcaa 440
Query: 241 ggct 244
||||
Sbjct: 441 ggct 444
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 11
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 244
Length of database: 644
Length adjustment: 9
Effective length of query: 235
Effective length of database: 635
Effective search space: 149225
Effective search space used: 149225
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)
| Query= MSMg01no445_i22.g1 MSMg01no445_i22.g1 CHROMAT_FILE:
MSMg01no445_i22.g1 PHD_FILE: MSMg01no445_i22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:48 2005
(468 letters)
>mm_chr9_28243068_28243932
Length = 865
Score = 853 bits (441), Expect = 0.0
Identities = 461/469 (98%), Gaps = 5/469 (1%)
Strand = Plus / Minus
Query: 1 ttattgtataaaggaggggacattagggcacagcatatgaagtggtctggccttgtctgg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 665 ttattgtataaaggaggggacattagggcacagcatatgaagtggtctggccttgtctgg 606
Query: 61 tcttcctttaccaagaggactgtcagtttcagtgttggattatggaccacccaaggctgc 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 605 tcttcctttaccaagaggactgtcagtttcagtgttggattatggaccacccaaggctgc 546
Query: 121 acaactcagcaccaccctctgactatgataaagaacttcctagcttctacggcagccttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 545 acaactcagcaccaccctctgactatgataaagaacttcctagcttctacggcagccttt 486
Query: 181 ttctgccaatgtttactcttgaaataacctacaactcaacaacaaggagcagggagcatg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 485 ttctgccaatgtttactcttgaaataacctacaactcaacaacaaggagcagggagcatg 426
Query: 241 ggcccttcttgcttccccccccccccacttttttttt-agagctagtaaatagcagcaca 299
||||| ||||||||||||||||| |||||||||| ||||||||||||||||||||||
Sbjct: 425 ggccc-acttgcttcccccccccc---ctttttttttcagagctagtaaatagcagcaca 370
Query: 300 gcagtggctcccttagaaagtcacaagtcatttgctaagcttgggagagaaggtgaggta 359
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct: 369 gcagtggctcccttagaaagtcacaagtcatttgctaaacttgggagagaaggtgaggca 310
Query: 360 ccttgtgttgactcctcccctttgcctctgctacagttcaccgggcatccttttgactca 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 309 ccttgtgttgactcctcccctttgcctctgctacagttcaccgggcatccttttgactca 250
Query: 420 ttttccggtgttttccacgatgctattggcataacatcttatcagtgga 468
|||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 249 ttttccggtgttttccacgatgctattggcataacatcttatcagtgga 201
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 23
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 468
Length of database: 865
Length adjustment: 10
Effective length of query: 458
Effective length of database: 855
Effective search space: 391590
Effective search space used: 391590
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
