BAC Information

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BAC

Clone NameMSMg01-445L01
Chromosome9 (Build37)
Map Location 31,673,220 - 31,673,589
singlet/doubletsinglet
Overlap geneBarx2
Upstream geneAdamts15, Adamts8, Zbtb44, BC038156, St14, Aplp2, EG638580, EG666539, Prdm10, Nfrkb, Tmem45b, LOC666558, EG666576
Downstream geneLOC100042266, Tpi-rs4, LOC666619, LOC666622, Grit, Kcnj5, Kcnj1, Fli1, LOC669759, LOC100041398, Ets1, LOC100041426
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-445L01.T7 (MSMg01no445_l01.b1)MSMg01-445L01.TJ (MSMg01no445_l01.g1)
ACCAG534561AG534562
length768766
length of high quality
(start - end)
429 (36 - 464)398 (67 - 464)
definitionCHROMAT_FILE: MSMg01no445_l01.b1 PHD_FILE: MSMg01no445_l01.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:59 2005CHROMAT_FILE: MSMg01no445_l01.g1 PHD_FILE: MSMg01no445_l01.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:13:59 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXCGCGGAATTCCCTTG
TTTCCTCCCAGAATTCTGGTGAACAAAGGTTCCCCACTTCTCTCTTTGGC
AATTTACTAAATCTTAAACCTGGCATTTAAAACTGTCATCGAATAGCCCA
TATGATGGAGTTAGAATTGTTGGTTATGCACTTAGACAAAAAAATAAACT
GACACTGAAAGAACCTAGTGGGGAAACCCCCACTCAATTCTTGTTCGGTG
CGCACCCAAGAATCACGAACAGACGACCATCTTGATGTAAAAGCATGAGG
TAGTTTAATGATCGAGCTCCGGGCCGACACATATCTCCCGCAGGAGACAG
AGGTGTCAACCACATGGTGGAGCCATAATGGCGGAGCTCTGGTTCGAAAC
ATATCTCACGCAGGAGACAGTGGTTTCGACCCCAAGGCTTGGAAGCTAGG
GACTTTTATAGAATAGGGGTGGGGCTGGGGGAGGAACTGTCGCTATCTCT
CATGATTGGTTTTTTTATACATCTATAGATTGTCATAAGTCCGCGAGATA
CTCATCCTCTATGTCCCCTCAGCCATTCCTTATGCCTCCTTTCTGTTTCT
TTCTTGCCCTGATCTTTTACCCGTTTTCCTTTTACCCATTTTTTTATTTT
CCCCCCTTTCCCCCTACCCTTTTTTTTTCTTACCCCACCCCATTTCCATT
GTCTCTAGCCAATGATGTGTTATCCCCGTACCTCTTTCTTCGGCCCGACT
AGTTCTCCCTCTTTCCTT
TXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXAAGGTAGGAACCTAGATGCAGGAAGTGATGCAGA
GGCCATAGAGGGATGTTGTGTATTGGCTTGCTGCTTTCTTACAGCACCAG
GACAAACAGCCCAGAGGTGGTACCTACCACAGTGAGGCCGGTTCTCCCAC
ATCAATCATCAATCAATAAAATGTACCACAGGCCTGTCTGGTGGGAGACT
TTTCTCAGTTGTAGTTTCCTCTTCCCAAGCTTGTTAAATTGACATAAAAC
TAGCCAGCCCAGAAACTAGAAAGATAACCCTGAGAACAGTACAGTACAGC
ATAGCTTGTGGTGTTTCAGAAGGAGGTTTACAAGCTCCTCAAGATGAGTG
TCCCTCATCAAGGCTGGTTGATGTTCTGAATTGAGAAACTGTCCGTCTGG
CTTTCTGGAGCAGAATAATTGCTGTGATTAATAAGAGACCAAACCCATCA
TAGTAAAACATTTGCTTTGCAAGGACCATTGGTGCTGGTTATATGCCGAT
AAATCCATGATGAATTAAGAATAAACCCGCCCGCTTTAAAGCGGACATCT
CTTTGGTAAATGGGTCCTCCAAATCTCGCAATAATAACCCTTTGGTTTTG
TATGTAGCCTCCCATTTATCCCTTCCTGTTTGCACATTCTTATTCTCGGC
TCCATAGTGTACCCATATCCCTTGTAGCCCACCTGCTCTCCAACATTCCC
TCCCCATTCTTGTTTA
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no445_l01.b1 MSMg01no445_l01.b1 CHROMAT_FILE:
MSMg01no445_l01.b1 PHD_FILE: MSMg01no445_l01.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:13:59 2005
         (429 letters)



>mm_chr9_31673220_31674048
          Length = 829

 Score =  671 bits (347), Expect = 0.0
 Identities = 365/371 (98%), Gaps = 2/371 (0%)
 Strand = Plus / Minus

                                                                       
Query: 4   ggaattcccttgtttcctcccagaattctggtgaacaaaggttccccacttctctctttg 63
           |||||||||||||   ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 ggaattcccttgtaggctcccagaattctggtgaacaaaggttccccacttctctctttg 311

                                                                       
Query: 64  gcaatttactaaatcttaaacctggcatttaaaactgtcatcgaatagcccatatgatgg 123
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 gcaatttactaaatcttaaacctggcatttaaaactgtcatcgaatagcccatatgatgg 251

                                                                       
Query: 124 agttagaattgttggttatgcacttagacaaaaaaataaactgacactgaaagaacctag 183
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 agttagaattgttggttatgcacttagacaaaaaaataaactgacactgaaagaacctag 191

                                                                       
Query: 184 tggggaaacccccactcaattcttgttcggtgcgcacccaagaatcacgaacagacgacc 243
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 tggggaaacccccactcaattcttgttcggtgcgcacccaagaatcacgaacagacgacc 131

                                                                       
Query: 244 atcttgatgtaaaagcatgaggtagtttaatgatc-gagctccgggccgacacatatctc 302
           ||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||
Sbjct: 130 atcttgatgtaaaagcatgaggtagtttaatga-cggagctccgggcctacacatatctc 72

                                                                       
Query: 303 ccgcaggagacagaggtgtcaaccacatggtggagccataatggcggagctctggttcga 362
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 71  ccgcaggagacagaggtgtcaaccacatggtggagccataatggcggagctctggttcga 12

                      
Query: 363 aacatatctca 373
           |||||||||||
Sbjct: 11  aacatatctca 1


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 18
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 429
Length of database: 829
Length adjustment: 9
Effective length of query: 420
Effective length of database: 820
Effective search space:   344400
Effective search space used:   344400
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)