Query= MSMg01no447_h19.b1 MSMg01no447_h19.b1 CHROMAT_FILE:
MSMg01no447_h19.b1 PHD_FILE: MSMg01no447_h19.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:24 2005
(481 letters)
>mm_chr9_91884263_91885143
Length = 881
Score = 803 bits (415), Expect = 0.0
Identities = 468/497 (94%), Gaps = 20/497 (4%)
Strand = Plus / Plus
Query: 5 gaattcagtctggcctagcttctctttaattgaaaagttaaggtccatgtagaagcctct 64
||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 205 gaattcagtatggcctagcttctctttaattgaaaagttaaggtccatgtggaagcctct 264
Query: 65 aattgagtaagattagacagatcatataactaagtgattattgatttattaaacctcaat 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 265 aattgagtaagattagacagatcatataactaagtgattattgatttattaaacctcaat 324
Query: 125 tatcttgaaatcttgaagaatgtgcacacagagtaaagaatacctataaaattagttggg 184
|||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||
Sbjct: 325 tatcttgaaatcttgaagaatgtgcacacagagtaaagaatatctataaaacgagttggg 384
Query: 185 actttgtggtcaagtagagactacatacttaaaaaacaaaacaaaaacaaaaacaaaaa- 243
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 actttgtggtcaagtagagactacatacttaaaaaacaaaacaaaaacaaaaacaaaaac 444
Query: 244 ------------aacccaaaccaaaccaa-----caacaacgacaacaaaaatgagttgc 286
||||||||||||||||| ||||||| |||||||||| |||||||
Sbjct: 445 aaaaacaaaaaaaacccaaaccaaaccaaaccaacaacaacaacaacaaaaacgagttgc 504
Query: 287 tgttggaagagttagcagagtgaaccaagaacttgctgtgtaagaatgaaatctgaactt 346
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 505 tgttggaagagttagcagagtgaaccaagagcttgctgtgtaagaatgaaatctgaactt 564
Query: 347 ttcatctccaggacccaagtaataagtctgatggatgggcatgtgcctgtaatccctgtg 406
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 565 ttcatctccaggacccaagtaataagcctgatggatgggcatgtgcctgtaatccctgtg 624
Query: 407 gtttacaggtaagagggggagtcatacaagaagatgctcaactctgcatgtacacacaca 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 625 gtttacaggtaagagggggagtcatacaagaagatgctcaactctgcatgtacacacaca 684
Query: 467 c--cagcatatttactg 481
| ||||||||||||||
Sbjct: 685 caccagcatatttactg 701
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 24
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 481
Length of database: 881
Length adjustment: 10
Effective length of query: 471
Effective length of database: 871
Effective search space: 410241
Effective search space used: 410241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no447_h19.g1 MSMg01no447_h19.g1 CHROMAT_FILE:
MSMg01no447_h19.g1 PHD_FILE: MSMg01no447_h19.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:16:24 2005
(372 letters)
>mm_chr9_92034604_92035375
Length = 772
Score = 654 bits (338), Expect = 0.0
Identities = 365/376 (97%), Gaps = 4/376 (1%)
Strand = Plus / Minus
Query: 1 tatggttgggggtcagcacaacatgaggaactgtactaa----agggtcgcagcattagg 56
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 649 tatggttgggggtcagcacaacatgaggaactgtactaaagggagggtcgcagcattagg 590
Query: 57 aaggctgagaaccactgttatgtctgatagcctgtgtgtggttttcgtttggttgaagca 116
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 589 aaggctgagaaccactgttatgtctgatagcctgtgtgtggttttcatttggttgaagca 530
Query: 117 aaaggtggagaactttatgcccagccttgagcttgttgaaatcagactatgtatgtacat 176
||||||||||||||||||||||||||||| || | |||||||||||||||||||||||||
Sbjct: 529 aaaggtggagaactttatgcccagccttgggcgtcttgaaatcagactatgtatgtacat 470
Query: 177 gtgggtgtgtttgtgaataaatataacaagtagaaatagagttttatcccaaaacgtctt 236
||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 469 gtgtatgtgtttgtgaataaatataacaagtagaaatagagttttatcccaaaacgtctt 410
Query: 237 ccttcaatctgtaaatttaaaagaactaaatgtgtgttaaacaagaaaacttattttaaa 296
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 409 ccttcaatctgtaaatttaaaagaactaaatgtgtgttaaacaagaaaacatattttaaa 350
Query: 297 ggcctgacttatagcacagaatctttaaactgttggttattattcttagattgaaaattt 356
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 349 ggcctgacttatagcacagaatctttaaactgttggttattattcttagattgaaaattt 290
Query: 357 ggtattttagtggtgt 372
||||||||||||||||
Sbjct: 289 ggtattttagtggtgt 274
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 372
Length of database: 772
Length adjustment: 9
Effective length of query: 363
Effective length of database: 763
Effective search space: 276969
Effective search space used: 276969
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
