Query= MSMg01no449_n22.b1 MSMg01no449_n22.b1 CHROMAT_FILE:
MSMg01no449_n22.b1 PHD_FILE: MSMg01no449_n22.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:36 2005
(479 letters)
>mm_chr9_65918164_65919042
Length = 879
Score = 882 bits (456), Expect = 0.0
Identities = 474/480 (98%), Gaps = 2/480 (0%)
Strand = Plus / Plus
Query: 1 caactcagccaggacccaatagtggcttccttatgggcttgttcagctgggatggatggg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 caactcagccaggacccaatagtggcttccttatgggcttgttcagctgggatggatggg 260
Query: 61 tgatggtggacagataataagaagtaggtacagaaatgtgtgtagagaagaggaacaaaa 120
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 tgatgatggacagataataagaagtaggtacagaaatgtgtgtagagaagaggaacaaaa 320
Query: 121 atgga-tgtagaggcggtggccccagctgctctcatctgccctgctggtcttctttagaa 179
||| | ||||||||||||||||||||||||||||||| ||||||||||||||||| ||||
Sbjct: 321 atg-agtgtagaggcggtggccccagctgctctcatccgccctgctggtcttcttcagaa 379
Query: 180 tgtagtaggatttttggttggcacattgcttagtttgggtttggtttttctaaatatgta 239
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 380 tgtagtaggatttttgtttggcacattgcttagtttgggtttggtttttctaaatatgta 439
Query: 240 gatacgttttctctgtgtagcccttgctgtcctgaaactccatctttaaaccaggctggc 299
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 440 gatacgttttctctgtgtagcccttgctgtcctgaaactccatctttaaaccaggctggc 499
Query: 300 ctctaactcagagatctgcctgcctctgcctcccaagtactgggattaaagatgtgtgcc 359
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 500 ctctaactcagagatctgcctgcctctgcctcccaagtactgggattaaagatgtgtgcc 559
Query: 360 tgcctggctatagtaagatttcaagacagaatgatcacttcatgtgtaaacacagaaatg 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 560 tgcctggctatagtaagatttcaagacagaatgatcacttcatgtgtaaacacagaaatg 619
Query: 420 gcttccatttctacctcagccccacactccttactgggctctaggtaaagtgctcaatgg 479
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 620 gcttccatttctacctcagccccacactccttactgggctctaggtaaagtgctcaatgg 679
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 22
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 479
Length of database: 879
Length adjustment: 10
Effective length of query: 469
Effective length of database: 869
Effective search space: 407561
Effective search space used: 407561
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
| Query= MSMg01no449_n22.g1 MSMg01no449_n22.g1 CHROMAT_FILE:
MSMg01no449_n22.g1 PHD_FILE: MSMg01no449_n22.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:19:36 2005
(462 letters)
>mm_chr9_66088382_66089243
Length = 862
Score = 847 bits (438), Expect = 0.0
Identities = 453/458 (98%)
Strand = Plus / Minus
Query: 5 gtttcctcctctgtctggttgtataagccaccactaggagtgccagagagccctcctggc 64
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 662 gtttcctcctctgtctggttgtataagccaccactaggagtgccagagagccctcctggc 603
Query: 65 tagctgttaatagggctaaaatatggtccgaaaggcagcctgagatccagcaaactggca 124
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 602 tagctgttaatagggctaaaatatggtccgaaaggcagcctgagatccagcaaactggca 543
Query: 125 gttcctcaggttgtggtctcttattccacctcccagaatagaaaaggagcccaagcctgg 184
||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 542 gttccccaggttgtggtctcttattccacctccccgaatagaaaaggagcccaagcctgg 483
Query: 185 ggctgggaaacagtttcaggtccaggagcaaaagtagagtgcttaataaacaggccattt 244
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 482 ggctgggaaacagtttcaggtccaggagcaaaagtagagtgcttaataaacaggccattt 423
Query: 245 cctctctttgggtccagttccctactccgcagatgtcatcctaagttcctttagcagttt 304
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 422 cctctctttgggtccagttccctactccacagatgtcatcctaagttcctttagcagttt 363
Query: 305 tgatgtgacacataattccaagctagctgggcaaacatctgctgctctgagccccaaggc 364
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 362 tgatgtgacacataattccaagctagctgggcaaacgtctgctgctctgagccccaaggc 303
Query: 365 tagccatgaaaaggatcctgtgcctctgcctcaggtcaggaaagaagagtaggccacggt 424
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 302 tagccatgaaaaggatcctgtgcctctgcctcaggtcaggaaagaagagtaggccacggt 243
Query: 425 agccacaggaagctgagcccccagccagactgccccgt 462
||||||||||||||| ||||||||||||||||||||||
Sbjct: 242 agccacaggaagctgggcccccagccagactgccccgt 205
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.34 0.600 1.10
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 21
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 462
Length of database: 862
Length adjustment: 10
Effective length of query: 452
Effective length of database: 852
Effective search space: 385104
Effective search space used: 385104
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)
|
