BAC Information

Click to search

BAC

Clone NameMSMg01-450F10
Chromosome9 (Build37)
Map Location 8,445,411 - 8,445,633
singlet/doubletsinglet
Overlap genenone
Upstream geneMmp3, Mmp1a, Mmp10, Mmp8, Mmp27, Mmp20, Mmp7, LOC665057, LOC100039782, Tmem123, Birc2, Birc3, Yap1, EG665090, 9230110C19Rik, AK129341, LOC100039855, 1700018P22Rik, LOC665108, 1700128F08Rik
Downstream geneTrpc6, Pgr, 9030420J04Rik
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450F10.T7 (MSMg01no450_f10.b1)MSMg01-450F10.TJ (MSMg01no450_f10.g1)
ACCAG538092AG538093
length760799
length of high quality
(start - end)
239 (77 - 315)246 (70 - 315)
definitionCHROMAT_FILE: MSMg01no450_f10.b1 PHD_FILE: MSMg01no450_f10.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:13 2005CHROMAT_FILE: MSMg01no450_f10.g1 PHD_FILE: MSMg01no450_f10.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:13 2005
singlet/doublet---singlet
BLAST hitno hit dataunique
sequence
TTCCTCAXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAGAGGATCCG
CGGAANTCTCTCTGCCCGAAACAGAATGGCTTTGAAGCACCTGAAAAAAA
ATGTTCAACATCCTTAATCATCAGGGAAATGCAAATCAAAACAACCCTGA
GATTCCACCTCACACTAGTCAGAGTGGCTAAGATCAAAAATTCAGTTGAC
AACAGATGCTGGCAAGGATGTGGAGAAATAGGAACACTCCTCCATTGTTG
GTGGGATTGCAAGCTTGTACAACCACTCTGGAAATCAGTCTGGCAGTTCC
TCAGAAAATTGGACTTTTTTTATTGGAGGATCCTGCAATACCTCTCCTGG
GCATATATCCAGAAGATGTTTCAACCTTTAAGAAGGACACATGCTCCACT
ATGTTCATAGCACCCTTATTTATAATAGTCAGAAGCTGGAAAGAACCCAG
ATGCCCCTCAACAGAGGAATGGATACAGAAAATGTGGTACATCTACACAA
TGGAGTACTACTCAGCTATTATAAAGAATTACTTTACGAAATTCCTAGGC
AAATGCATGGATCTGGACAGCATCATCCTGAGTGAGGTGACCCACTCTTT
ATTGAACTTCCACCATATGTACTCCCTGTACATATATCTCCGGAATGTGC
TTCTCACACCTCCCCCTGCCATCTTACTTTTTACTTTCCCATCCTGCTAT
TACCTTACCCTTCCCGTTCGGATCTATTTTCATTATCCACCTTTTTCATA
GTCTCCATTG
NCGATGATGTGGGAGGCCTGGCGGCCGCCTGTTTTCAAAATTGGGGTGAC
CTATAGAAGTTTCGCGAAATTCTCATTAAAGGGGCGGGCTAGCCTGAGGG
CACTTTAGAGGTGACTTAACATAACAGAAAAGATCAGTGTATCTGTGACA
CAGCATCAAGTGGGAGGGGCAAAGTCCATAATGAAAAGATAGTAAGAGTT
AGGACTTGGGTTTTATTTGAATTCTACTGAAATGCTCACAATCAGAGTGC
TGTTTCAAACAGAGTGGTATTTAAAATGACTTTTTCTAATGTTGTATAGT
GATTGACTTGGGGTACTTGGTGGTTTGCTCCATTGCTCATGCTTCAGTGA
ATATAGTAACAGTGGAGACAGGGGAAAAGGGGGATTTGAGATGTGTTTCA
GAGGTCATGTCAATCCAAGTTGCTCAGAGAATGCATGGAGTGATAGGGGA
GAGTGTAAAGAGGAGAAAAAGAGTCTAAGGGTGTCAAGGATAATGTTAAT
CAGTTTNCTCCTCTATTCATCCCTTTGTTCTTTTTCTTCCTCCCTCCTTC
TTTTTTTTTTCTCTCCTTCTCTATCTTTTTTCTTCTTATTACATTTATTT
TTCCCCTCTCTCATTCATTCTTTTTGTCTTCTCTTCTATTATTATTCCTT
CCTTTCTCTTGTCTGCCCTGCTTTTTTTTTTTTTTTCTTTATCTGCTTCT
CTCTTCTTCTTTCTCTATCTTCGTTCCTTCACCGTTTCCCTGTTTCTTCC
CGTTATTTACCTAACTATTAATCACTCCACCTTTTTATCTCTCCCCTTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_f10.g1 MSMg01no450_f10.g1 CHROMAT_FILE:
MSMg01no450_f10.g1 PHD_FILE: MSMg01no450_f10.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:13 2005
         (246 letters)



>mm_chr9_8445187_8445835
          Length = 649

 Score =  408 bits (211), Expect = e-118
 Identities = 219/223 (98%), Gaps = 3/223 (1%)
 Strand = Plus / Plus

                                                                       
Query: 25  ctgagggcactttagaggtgacttaacataacagaaaag---atcagtgtatctgtgaca 81
           |||||||||||||||||||||||| ||||||||||||||   ||||||||||||||||||
Sbjct: 225 ctgagggcactttagaggtgacttcacataacagaaaaggagatcagtgtatctgtgaca 284

                                                                       
Query: 82  cagcatcaagtgggaggggcaaagtccataatgaaaagatagtaagagttaggacttggg 141
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 285 cagcatcaagtgggaggggcaaagtccataatgaaaagatagtaagagttaggacttggg 344

                                                                       
Query: 142 ttttatttgaattctactgaaatgctcacaatcagagtgctgtttcaaacagagtggtat 201
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 345 ttttatttgaattctactgaaatgctcacaatcagagtgctgtttcaaacagagtggtat 404

                                                      
Query: 202 ttaaaatgactttttctaatgttgtatagtgattgacttgggg 244
           |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 405 ttaaaatgactttttctaatgttgtatagtgattgacttgggg 447


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 12
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 246
Length of database: 649
Length adjustment: 9
Effective length of query: 237
Effective length of database: 640
Effective search space:   151680
Effective search space used:   151680
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)