BAC Information

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BAC

Clone NameMSMg01-450O07
Chromosome9 (Build37)
Map Location 75,860,371 - 75,860,811
singlet/doubletsinglet
Overlap genenone
Upstream geneBC031353, Arpp19, LOC100040812, Myo5a, LOC677501, Myo5c, Gnb5, Bcl2l10, LOC384954, Mapk6, Leo1, EG666190, LOC100042070, Tmod3, Tmod2, Lysmd2, Scg3, LOC100042107, Bmp5, EG620071
Downstream geneHmgcll1, Gfral, Hcrtr2, C530008M07Rik, Tinag
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-450O07.T7 (MSMg01no450_o07.b1)MSMg01-450O07.TJ (MSMg01no450_o07.g1)
ACCAG538511AG538512
length731804
length of high quality
(start - end)
445 (78 - 522)202 (79 - 280)
definitionCHROMAT_FILE: MSMg01no450_o07.b1 PHD_FILE: MSMg01no450_o07.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:58 2005CHROMAT_FILE: MSMg01no450_o07.g1 PHD_FILE: MSMg01no450_o07.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:20:58 2005
singlet/doubletsinglet---
BLAST hituniqueno hit data
sequence
GCTGCGGCTCTATXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCAAAAGAG
GATCCGCGGAATTCAAGACTTCGAGACATTACCTAAAATCAATAAAATCA
CGGAAAAAAAACAGGAAATCTGATTCATTTTAATTTTCCGTAGGTGTTCA
TATCTTTTATGTTTAAATTATTGGAACACTGAAACAAAAATAGCTTAGTT
ATGTAAGGTAGAAAGAAAATAGAGTTTCGGTTTGAAATATAGCATTAAAC
ATCTATGTGATTGCCCAGCGATGTTATGTCTACTGGCTTGTGGAGCCCAT
TTCATTCTTGATGGTATGACATTTGCTCNTTCTTTGTAGACACAGCTGGC
CTGGAATTAGCTATCTAGCCTAGACTGGCCTTAAACTTACAGTCATTTTT
CTACCTTACCTTCCTAAGCAATATGATTATAGTTATGCTCCAGGACACTA
GGTTTGGAATCCAGGTTTCTTTATTTTTATTATTATTTTTAACTTTAAAT
CCATTTTTGTGCTTTCTTAACAGACAAAATAAAATGGAGAATCTGTGTGT
ATGTGCATGCCAGTATGGGTTCCCCCAGATGCTAGAAGAGTCAGATTCCC
CTGTTGCTAGACGCCATAGGTGTTTGGTATTCTTCTACATGTACTCCACA
ATATTTTTTTTTCCTTGTTACCTCTGATCACCATCTTCAGTGTCTCTGTC
CCCTTACTTTATCTACCCCCTCTCCCTCCCC
GTCGATTAXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXCTGATCTTTCCAGAACTTTTAT
CATGAATGGGTGTTGGATCTTGTCAAATGCTTTTTCTGCATCCAACGAGA
TGATCATGTGGTTTTTGTCTTTGAGTTTGTTTATATAGTGGATTACATTG
ATGGATTTTCGTATATTAAACCATCCCTGCATTCCTGGAACAATGGCCTT
TCTCTACACAAAGAATAAACAGGCTGAGAAAGAAATTAGGGAAACAACAC
CCTTCTCAATAGTCACAAATAATATTTTATATCTCGGCGCGACTCTAACT
AAGGAAGTGAAAGATCTGTATGATAAAAACTTCTAGTCTCTGAAGAATGA
TATCACTGAATATCCCACAACATTGTATCGATCTCCTATGCTCTTTTACT
GTCCCTATCAACTTTTGTCCATTTGTTCTTTTTTCCCTTTGCTATCTTCT
GTTCCTATTCTTCTTCTCTTTCCTCTTCTTCCCTCATTTCTCTTCTTGAC
TTAGTTTCGCCTCTATCTTTCTTCCTCTTCCCGCTTCTTCTCTTTCCTCC
TTCTTTCTTCTTTCCTCCCCTTCTTTTTCGCCTCTACCTCCTTCTCCCGT
CCTTTTCCTTCTCCTTCCCTTTTCCTACCTCCTTCTTCCTCCTTCACTCT
TTTTCTTGCCCCTCATCTTTCTTTTTCCCCTCTTCCTTCTTCTTTCCTTT
TCCCTTCCTTCCCCTTCCCCTTCTTCTTTTTTCCCTTTTCTTCCTTCCCT
CTTT
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no450_o07.b1 MSMg01no450_o07.b1 CHROMAT_FILE:
MSMg01no450_o07.b1 PHD_FILE: MSMg01no450_o07.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:20:58 2005
         (445 letters)



>mm_chr9_75860171_75861013
          Length = 843

 Score =  770 bits (398), Expect = 0.0
 Identities = 431/443 (97%), Gaps = 2/443 (0%)
 Strand = Plus / Plus

                                                                       
Query: 1   attacctaaaatcaataaaatcacggaaaaaaaacaggaaatctgattcattttaatttt 60
           ||||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||||
Sbjct: 201 attacctaaaatcaataaaatcatggaaaaaa--caggaaatctgattcattttaatttt 258

                                                                       
Query: 61  ccgtaggtgttcatatcttttatgtttaaattattggaacactgaaacaaaaatagctta 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 259 ccgtaggtgttcatatcttttatgtttaaattattggaacactgaaacaaaaatagctta 318

                                                                       
Query: 121 gttatgtaaggtagaaagaaaatagagtttcggtttgaaatatagcattaaacatctatg 180
           ||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |||
Sbjct: 319 gttatgtaaggtagaaaaaaaatagagtttaggtttgaaatatagcattaaacatccatg 378

                                                                       
Query: 181 tgattgcccagcgatgttatgtctactggcttgtggagcccatttcattcttgatggtat 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 379 tgattgcccagcgatgttatgtctactggcttgtggagcccatttcattcttgatggtat 438

                                                                       
Query: 241 gacatttgctcnttctttgtagacacagctggcctggaattagctatctagcctagactg 300
           ||||   |||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 439 gacacaggctctttctttgtagacacagctggcctggaattagctatctagcctagactg 498

                                                                       
Query: 301 gccttaaacttacagtcatttttctaccttaccttcctaagcaatatgattatagttatg 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 499 gccttaaacttacagtcatttttctaccttaccttcctaagcaatatgattatagttatg 558

                                                                       
Query: 361 ctccaggacactaggtttggaatccaggtttctttatttttattattatttttaacttta 420
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 559 ctccaggacactaggtttggaatccaggtttctttatttttattattatttttaacttta 618

                                  
Query: 421 aatccatttttgtgctttcttaa 443
           |||| ||||||||| ||||||||
Sbjct: 619 aatctatttttgtgttttcttaa 641


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 20
Number of extensions: 2
Number of successful extensions: 2
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 445
Length of database: 843
Length adjustment: 10
Effective length of query: 435
Effective length of database: 833
Effective search space:   362355
Effective search space used:   362355
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)