GTCTCNNNNNATCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXCGCGGAATTCATTCTTCTTCTTGTACCTACCACAAATATGTCCA
GACGTAGACTGACACGGGTACGGTTGTGCTTGCCAGTCTGTACCCTTCCC
CTGTCAGCCAAGTATAAAGCTCAGTGACACTTAGCACCACGCCTTCCCTT
CACATCAGCCTTCCACCAACAGTCCCATCAGGAAAGCCCAAGAGTAGCTG
ACCCACTAGCACAGTGGTCCTCAACCTTCCTAATGCTATGGCCTTTTAAC
ACAGTTCCTCATGTAGTGGTAACCTCCAACCATAAAATTATTTCATTGCT
ACTTCATAATAATAATTTTGTACTGTTATTTGCTATTAGTAATATAAATA
TCTGATATGCAGGATATCCGATATGTGACCCCTCTCCCCCCCCCCATGGG
GTCATGACTCACAGGTTGAGAACTACTTTAGTACCTATCCACCTGTATGA
ACACACAGCAAATTTCCAATTCACTGGTCCTATTTGATTTGAACAGAGGA
GCTCAGCCCTGAGCCTCACTCCTAAAGAACTTTTTAGTCTTCCCTTTCTA
GCGGCTGCTGCAGGGGGAGGGGGAGATGAAACGAGACCAAAATGTTAGGA
AATTGAAAGGATCCCAGTAGAAGATCTAAGATGGATTTAACTGTTCTGAT
AGAGTGTAAATGAATGCCAAATGTTGTT

TTTTTAATCATGAGGGTGGCTGGGGCGCTGGTGCGACTTTGGGACCTATG
AGGATCGGGATTCTTTTTTCCCTGTTTTGATTATTTGGGTCAGCTGGNAG
AAACAAAACATAANNAANNTNNNNNNNNNAAAANNNNNNNNNNNCNNNNA
AAANNNNNNAAAAAAAAAAANNNNNGGAGGAATTAAAGCTAACAAAAGAC
TCTTGATGGANAAAAGGAACCAGGAGGGGGGTGGTTCATCCGGGGGGGCC
CCAGGGGACCGGCNAGGAAGAAGGGTCTGGCCAAACGGGGCCCGGGGGAA
AAAGGGGGGAAAACCTTCGGGTTCGGGAAAGGAAGGGGGAACCTTAACGG
AATTTTCCGGGGGGAGGGGGGGAAATCTGGGGGGGGGGGGGGGTTTATGG
GGGGCGCGGGGGGCTAAAAAGGGGGGGGCCCCCCCGGGGGGGGTATAAAA
AGGGGGGGGCCCTGGGGGGAAAGGGGGAGGAAATTTTTTCGGGGGTTCTG
GGGGGGGGGGGATGGGGGCTCTTTTGGGGGGGGGGGGGGTTGGGGGGGGC
CCACTTTTTTTTTTTGGACGTTTGTGGGGGGGGGGGGGGGGCCCCTCCGG
GGGGGGGGGGGGGGGGGGGGTCTCCC

Query= MSMg01no451_b05.b1 MSMg01no451_b05.b1 CHROMAT_FILE:
MSMg01no451_b05.b1 PHD_FILE: MSMg01no451_b05.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:21:12 2005
         (639 letters)



>mm_chr9_13462434_13463472
          Length = 1039

 Score = 1058 bits (547), Expect = 0.0
 Identities = 606/635 (95%), Gaps = 17/635 (2%)
 Strand = Plus / Plus

                                                                       
Query: 5   gaattcattcttcttcttgtacctaccacaaatatgtccagacgtagactgacacgggta 64
           ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 205 gaattcattcttcatcttgtacctaccacaaatatgtccagatgtagactgacacgggta 264

                                                                       
Query: 65  cggttgtgcttgccagtctgtacccttcccctgtcagccaagtataaagctcagtgacac 124
           |||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 265 cggttgtgcttgtcagtctgtacccttcccctgtcagccaagcataaagctcagtgacac 324

                                                                       
Query: 125 ttagcaccacgccttcccttcacatcagccttccaccaacagtcccatcaggaaagccca 184
           ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 325 ttagcaccacgccttcccttcacatcagccttccaccaacagtcccaccaggaaagccca 384

                                                                       
Query: 185 agagtagctgacccactagcacagtggtcctcaaccttcctaatgctatggccttttaac 244
           |||||||        |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 385 agagtag--------ctagcacagtggtcctcaaccttcctaatgctatggccttttaac 436

                                                                       
Query: 245 acagttcctcatgtagtggtaacctccaaccataaaattatttcattgctacttcataat 304
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 437 acagttcctcatgtagtggtaacctccaaccataaaattatttcattgctacttcataat 496

                                                                       
Query: 305 aataattttgtactgttatttgctattagtaatataaatatctgatatgcaggatatccg 364
           ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct: 497 aataattttgtactgttatttgctatttgtaatataaatatctgatatgcaggatatccg 556

                                                                       
Query: 365 atatgtgacccctctccccccccccatggggtcatgactcacaggttgagaactacttta 424
           |||||||| ||||        | ||||||||||| |||||||||||||||||||||||||
Sbjct: 557 atatgtga-ccct--------caccatggggtcacgactcacaggttgagaactacttta 607

                                                                       
Query: 425 gtacctatccacctgtatgaacacacagcaaatttccaattcactggtcctatttgattt 484
           ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct: 608 gtacctatccacctgtatgaacacacagcaaatttccaattcaatggtcctatttgattt 667

                                                                       
Query: 485 gaacagaggagctcagccctgagcctcactcctaaagaactttttagtcttccctttcta 544
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 668 gaacagaggagctcagccctgagcctcactcctaaagaactttttagtcttccctttcta 727

                                                                       
Query: 545 gcggctgctgcagggggagggggagatgaaacgagaccaaaatgttaggaaattgaaagg 604
            ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 728 acggctgctgcagggggagggggagacgaaacgagaccaaaatgttaggaaattgaaagg 787

                                              
Query: 605 atcccagtagaagatctaagatggatttaactgtt 639
           ||||||||||||||||||||||| |||||||||||
Sbjct: 788 atcccagtagaagatctaagatgcatttaactgtt 822


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 27
Number of extensions: 3
Number of successful extensions: 3
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2
Number of HSP's successfully gapped: 1
Length of query: 639
Length of database: 1039
Length adjustment: 10
Effective length of query: 629
Effective length of database: 1029
Effective search space:   647241
Effective search space used:   647241
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)