BAC Information

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BAC

Clone NameMSMg01-453D04
Chromosome9 (Build37)
Map Location 60,097,948 - 60,275,762
singlet/doubletdoublet
Overlap geneThsd4
Upstream geneAdpgk, Bbs4, Arih1, LOC621119, 4930425N13Rik, Hexa, Brunol6, Parp6, Pkm2, 4933407I18Rik, Gramd2, Senp8, Myo9a, EG665385, LOC100040361, Nr2e3, EG665389
Downstream geneLOC100039792, EG384942, Lrrc49, Larp6, LOC100040447, Uaca, ENSMUSG00000052143, A430102L10, LOC100040481, Tle3
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453D04.T7 (MSMg01no453_d04.b1)MSMg01-453D04.TJ (MSMg01no453_d04.g1)
ACCAG540269AG540270
length754818
length of high quality
(start - end)		447 (55 - 501)273 (87 - 359)
definitionCHROMAT_FILE: MSMg01no453_d04.b1 PHD_FILE: MSMg01no453_d04.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:59 2005CHROMAT_FILE: MSMg01no453_d04.g1 PHD_FILE: MSMg01no453_d04.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:23:59 2005
singlet/doubletdoubletdoublet
BLAST hituniqueunique
Map location.(60,275,442 - 60,275,762)(60,097,948 - 60,098,216)
sequence
TTTTTTTACACCTATXXXXXXXXXXXXXXXXXXXXXXXXXXXXTTTCGAG
AGGATCCGCGGAATTCTTGCCACCATATTCATATGTGCCCATGGAGGCCA
ATGGAACCATAGGACAGCATCTGGGTCGATTCTTCAAGCCAAAACCTACT
CTTGTTTTATTTAAAAACAAACAAACAAACAAACAAACAAAAACCTAGTC
CCTTACTGATTGATTTGGCTAGGCTGACCAAGCAGTACTCTCCAGGATTC
TGCTCATCTCCTCCTCCCTAACCACGCCTGGCTTTGCTGCCCCCACCCCC
TACATGTGTTCTTAGAGATGGCGCTTAGGGCTGCCTGCTTGCACGCAATT
ACTTTACTGACTGACCACTTTCCCAGCCTCACATGGCCTTTCAGTCATTT
TGTTGCCTTTACAGAACCAAGGCTACTCCTACCCTGCTTTTTGATTATAA
AATTATTTTTCAAAGTGAAGAGAATTCTGAGACGCCATTATACCTCACAC
TTTATGGAGCCCCTCATAGGAGTGGAATGAGGGAAGAGCTGGGCTATGAA
AACCATATCGTCGGCTAGAGACAAGCTATTATTACCTGATTGCAGGGAAC
CTCATTTGATAAAATGTTGACTTAAAATTTGGTTGTTTGGTACTTTCTTA
ACTACTGATTAATTTTTTATGTGCCCTTTCTATTTGTCATGATGAAGTCT
ACCCCATGTCTTGTACGGGTTATGGCTTTCTGCTTTATATATCATGTTCG
TCTT

ACCTTTCATTCTATGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXAAATAAATGAGAAG
TCTTACATCCTAGCTCAAGACTGAGTCATGCAACTGTCTCTAGCAAATTA
CCCAACTCAATTACTCCAAGTGACAGTCTAATTCTAAGCAGATTCTCCAT
GCAGCTGGTGGGACGGCAGAGGGGGAAGAGGTGCTTGCTGCCCTTGACCC
GAGTTCTCCAGAACCCACATGAGAGAAGGAGGGAACTGATTCTTTCAAGT
TGTCCTCTGACCTCAAACTGAATGCCAATATACATACTAAAAGTGTGGTT
GTGTGNGNGNNGCGTGTGNTTGTGTGTGTGCGTTTTTTTGGTTATNTTTT
CTTTTTTTCTCCTCTTTCTTTTTTTTTTTTTTTTTTTTCTTTCTGTTTTC
CCCCTTTTTCTTTTTTTATGTCCTTATAACACTACTTTTTGATATTTTTT
ATATATTTTTTCTTTTCTTTGCTTTTTTTCTTTTTATACCATATTGTATT
TATCCTGTTTATGCTCTTCACCCTTAATTTTTACCTTATTTTATTCCTTT
CACAATTATTTTTATATGTTTCTCTTTTCCCCGTCTCTTTTTATTTATCT
CCCTTTCTATCCTTTTACTCATCTCCACATTTTTTCTTTTTTATTCTTTA
TTATTCAACTTTTCTATATCTTTTTATTTTTATTTCTATATCTCCTTCAC
ACCTTTCTATCTTATTCGTCATATTTTTAGCTAGTAGGACTATTCTATTG
ATATATTTATACTTATTN
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_d04.b1 MSMg01no453_d04.b1 CHROMAT_FILE:
MSMg01no453_d04.b1 PHD_FILE: MSMg01no453_d04.b1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:59 2005
         (447 letters)



>mm_chr9_60274916_60275762
          Length = 847

 Score =  621 bits (321), Expect = 0.0
 Identities = 321/321 (100%)
 Strand = Plus / Minus

                                                                       
Query: 127 aaacaaacaaaaacctagtcccttactgattgatttggctaggctgaccaagcagtactc 186
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 847 aaacaaacaaaaacctagtcccttactgattgatttggctaggctgaccaagcagtactc 788

                                                                       
Query: 187 tccaggattctgctcatctcctcctccctaaccacgcctggctttgctgcccccaccccc 246
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 787 tccaggattctgctcatctcctcctccctaaccacgcctggctttgctgcccccaccccc 728

                                                                       
Query: 247 tacatgtgttcttagagatggcgcttagggctgcctgcttgcacgcaattactttactga 306
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 727 tacatgtgttcttagagatggcgcttagggctgcctgcttgcacgcaattactttactga 668

                                                                       
Query: 307 ctgaccactttcccagcctcacatggcctttcagtcattttgttgcctttacagaaccaa 366
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 667 ctgaccactttcccagcctcacatggcctttcagtcattttgttgcctttacagaaccaa 608

                                                                       
Query: 367 ggctactcctaccctgctttttgattataaaattatttttcaaagtgaagagaattctga 426
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 607 ggctactcctaccctgctttttgattataaaattatttttcaaagtgaagagaattctga 548

                                
Query: 427 gacgccattatacctcacact 447
           |||||||||||||||||||||
Sbjct: 547 gacgccattatacctcacact 527


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 15
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 447
Length of database: 847
Length adjustment: 10
Effective length of query: 437
Effective length of database: 837
Effective search space:   365769
Effective search space used:   365769
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)

Query= MSMg01no453_d04.g1 MSMg01no453_d04.g1 CHROMAT_FILE:
MSMg01no453_d04.g1 PHD_FILE: MSMg01no453_d04.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:23:59 2005
         (273 letters)



>mm_chr9_60097748_60098420
          Length = 673

 Score =  520 bits (269), Expect = e-152
 Identities = 269/269 (100%)
 Strand = Plus / Plus

                                                                       
Query: 1   aaataaatgagaagtcttacatcctagctcaagactgagtcatgcaactgtctctagcaa 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 aaataaatgagaagtcttacatcctagctcaagactgagtcatgcaactgtctctagcaa 260

                                                                       
Query: 61  attacccaactcaattactccaagtgacagtctaattctaagcagattctccatgcagct 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 attacccaactcaattactccaagtgacagtctaattctaagcagattctccatgcagct 320

                                                                       
Query: 121 ggtgggacggcagagggggaagaggtgcttgctgcccttgacccgagttctccagaaccc 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 ggtgggacggcagagggggaagaggtgcttgctgcccttgacccgagttctccagaaccc 380

                                                                       
Query: 181 acatgagagaaggagggaactgattctttcaagttgtcctctgacctcaaactgaatgcc 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 acatgagagaaggagggaactgattctttcaagttgtcctctgacctcaaactgaatgcc 440

                                        
Query: 241 aatatacatactaaaagtgtggttgtgtg 269
           |||||||||||||||||||||||||||||
Sbjct: 441 aatatacatactaaaagtgtggttgtgtg 469


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 13
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 273
Length of database: 673
Length adjustment: 9
Effective length of query: 264
Effective length of database: 664
Effective search space:   175296
Effective search space used:   175296
X1: 7 (13.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 7 (14.4 bits)
S2: 7 (14.3 bits)


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