BAC Information

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BAC

Clone NameMSMg01-453F08
Chromosome9 (Build37)
Map Location 77,122,780 - 77,123,337
singlet/doubletsinglet
Overlap gene2310046A06Rik
Upstream geneHcrtr2, C530008M07Rik, Tinag, LOC436082
Downstream gene5730403I07Rik, Lrrc1, Klhl31, Gclc, LOC100042212, Elovl5, Gcm1, LOC666353, Fbxo9, Ick, C920006O11Rik, Gsta4, LOC100041074, Gsta1, LOC666367, LOC100042295, LOC666373
LinkOpen Mouse BAC browser



BAC End Information

BAC end BAC-end 1BAC-end 2
end nameMSMg01-453F08.T7 (MSMg01no453_f08.b1)MSMg01-453F08.TJ (MSMg01no453_f08.g1)
ACCAG540372AG540373
length1,158751
length of high quality
(start - end)
---558 (84 - 641)
definitionCHROMAT_FILE: MSMg01no453_f08.b1 PHD_FILE: MSMg01no453_f08.b1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:11 2005CHROMAT_FILE: MSMg01no453_f08.g1 PHD_FILE: MSMg01no453_f08.g1.phd.1 CHEM: term DYE: big TIME: Wed May 18 19:24:11 2005
singlet/doublet---singlet
BLAST hitno hit dataplural
sequence
CGTTTTCCCGCCCTCCACCGCCCGCATTTCTCCCTCACCCCCCCACATAC
CCTGCGATGACGCACACACTAAATAGTCTTGACGAGTGTGCACCCATTGT
ATATACTTACATTAGTCGGCCCGCTATATTACCAGTACACGCGCCCACAC
ACCCTACGCGGGATGTGTGCTGTGTGTCGAGCCAACCACCCCCGTGCCTC
ACGAAGTAAAATAAACGTCACTTAATATACAGTGTGTTAAGCAGAGAGAG
AGAGCCGGCAGTTCGGTAGCGGCGATCCTGACATCCAGCATACTCGGGTC
AGTGATATCAGGTGATCGGTAACGGCGGATTAGTCGCCTGCAATTGGGTC
CTCAGTTTGCCGTTTCGTTCTCCCCTGTGTCTCCCCACCCCCTTTTCTCC
AATCCGCCCGCCCTATTATCTTGTCTGCACCTTGAATCATACTCGTCCCC
CACGCGGTCACTATATAACACTGGACCACACAGCTCATCTCGACATCATT
AGTACGGCTGTCGCTGTTTTGTATATAACCTCCTCTTATCCTCGCAGTCG
TTCAGTATCGACTGGTTAACTTAATGTGTTTATCTGAATGGACCGACATC
TCCTTCCTTTTTATGCGTGACGCTGCGGCTTCAAATCTACTCGCTGACGA
TCTAATCCTATCTTCCGTCCAAAATTTCATAGCTCTCGACTACCGCTCGA
GTTCCACGACGCACTGAGCGCGACTATTGTCTCTGCATACGCGCCGTAAG
TACCTAGCTCGACCGACATATCCGACCAGACTAGTTGCTGACCTCTGTCT
CGCGTATTGCCACGACCACCAACTTTCGCTACTCTTCTTGCTGGTGACTT
ACTCTNGCCGGCATACTTTATGTCCGTGCATGCAAACACGAGTAGACGTT
CTCAACGCGGCGGCNCGGAGTTCGCAATAATGATACGTAGATGGTATCTC
TGATTATGTGCATAATACGATCATACGTGTTCGCACCCGCTCCTATACAC
AAGCAGCTCGCTCGTTGCGTATGAACACTCATGTGTTGTCTAGCGCACAA
CCGTACGCGCGTGCATCTACTTCGAGACGAGTGGTCTTGATCGCGCGGAC
NATATNCGCGCGATATCTGTCTCACCATCGAGCTACTATATATTATACGC
TTTCTGAT
CAATTCCTCAATGCTXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX
XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXATTACTTGCAGTTTGTT
AAACATTGACTGAGCACTAGCCCAATTACAGACATTGTGCTACATCTGGG
GAAACAGTAATGGGTACTAGTGGGGACTTTTTATATGAAATTAATTGATA
TGGAATAGCACACCCAAAATGTGGGCAGTGCTACCAACCTATGGGTTGGG
GTCCTGGACTGAACAAAAATGAAAGGGGAACTGAATATCAGCATCCGTCT
CTCCCTGCTTCCTGACCACAGACGCGGTGTGATCACCTGCCTCAAGCTCC
TGCCACCATGCCTTCCCCGCCATGACAGACTGTAGCCTCACACAATGAGC
TAAAAGAGACCCTGCCTTCCATTAGTTCTTTTGTCAAACACTTTGCCTCA
CCAATGCAAAAAGTTACTAAGACAATGGACTACAAGTTGGGTTTGGGAAT
TACTGCAGGCATAGAAGAACTTGGCAATGCTTTGCAGAGATTAATTTGAC
TTTTTGTTGGATGGATACTAATTAATGTGGAAAGAAGTAATGTGGGCAAT
AGTTCTGTGAGTCAACACAGGAAGTAGAAAAAAATCTCAACCAATGTGGT
AGCAGGTAGCACAAAGATCATAAAAGACTGAATGTGAAAGAGTCTGATTG
GGTGAATATGGTCTAAGTCCATGATGCACATACATAAAAACATTCTTATG
G
quality valuesOpen.Open.




Alignment Information

BAC End 1BAC End 2
Query= MSMg01no453_f08.g1 MSMg01no453_f08.g1 CHROMAT_FILE:
MSMg01no453_f08.g1 PHD_FILE: MSMg01no453_f08.g1.phd.1 CHEM: term DYE:
big TIME: Wed May 18 19:24:11 2005
         (558 letters)



>mm_chr9_77122580_77123537
          Length = 958

 Score = 1064 bits (550), Expect = 0.0
 Identities = 556/558 (99%)
 Strand = Plus / Plus

                                                                       
Query: 1   attacttgcagtttgttaaacattgactgagcactagcccaattacagacattgtgctac 60
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 201 attacttgcagtttgttaaacattgactgagcactagcccaattacagacattgtgctac 260

                                                                       
Query: 61  atctggggaaacagtaatgggtactagtggggactttttatatgaaattaattgatatgg 120
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 261 atctggggaaacagtaatgggtactagtggggactttttatatgaaattaattgatatgg 320

                                                                       
Query: 121 aatagcacacccaaaatgtgggcagtgctaccaacctatgggttggggtcctggactgaa 180
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 321 aatagcacacccaaaatgtgggcagtgctaccaacctatgggttggggtcctggactgaa 380

                                                                       
Query: 181 caaaaatgaaaggggaactgaatatcagcatccgtctctccctgcttcctgaccacagac 240
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 381 caaaaatgaaaggggaactgaatatcagcatccgtctctccctgcttcctgaccacagac 440

                                                                       
Query: 241 gcggtgtgatcacctgcctcaagctcctgccaccatgccttccccgccatgacagactgt 300
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 441 gcggtgtgatcacctgcctcaagctcctgccaccatgccttccccgccatgacagactgt 500

                                                                       
Query: 301 agcctcacacaatgagctaaaagagaccctgccttccattagttcttttgtcaaacactt 360
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 501 agcctcacacaatgagctaaaagagaccctgccttccattagttcttttgtcaaacactt 560

                                                                       
Query: 361 tgcctcaccaatgcaaaaagttactaagacaatggactacaagttgggtttgggaattac 420
           ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 561 tgcctcaccaatgcaaaaagttactaagacaatggactacaagttgggtctgggaattac 620

                                                                       
Query: 421 tgcaggcatagaagaacttggcaatgctttgcagagattaatttgactttttgttggatg 480
           ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 621 tgcaggcatagaagaacttggcaatgctttgcagagattaatttgactttttgttggatg 680

                                                                       
Query: 481 gatactaattaatgtggaaagaagtaatgtgggcaatagttctgtgagtcaacacaggaa 540
           ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 681 gatactaattaatgtggaaagaagtaatgtgggcaatagttttgtgagtcaacacaggaa 740

                             
Query: 541 gtagaaaaaaatctcaac 558
           ||||||||||||||||||
Sbjct: 741 gtagaaaaaaatctcaac 758


Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.34    0.600     1.10 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 2, Extension: 1
Number of Sequences: 1
Number of Hits to DB: 26
Number of extensions: 1
Number of successful extensions: 1
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1
Number of HSP's successfully gapped: 1
Length of query: 558
Length of database: 958
Length adjustment: 10
Effective length of query: 548
Effective length of database: 948
Effective search space:   519504
Effective search space used:   519504
X1: 8 (15.9 bits)
X2: 517 (999.5 bits)
X3: 517 (999.5 bits)
S1: 8 (16.4 bits)
S2: 8 (16.2 bits)